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[178559_at]

Description C47B2.9 /REP_DB=WormBase Gene ID /WP=CE23600 /TR=Q9U3L4 /GB=CAB54199.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 80      6grp_total > 52      4grp_total > 50      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 224.5
(-1.2)
P 		197.4
(-3)
P 		288.3
(3)
P 		197.2
(-3)
P 		91
B 182.5
(-2.2)
P 		291.2
(3)
P 		218.8
(-0.5)
P 		165.5
(-3)
P 		126
C 184.6
(-2.7)
P 		264.8
(3)
P 		180.7
(-3)
P 		223.7
(0.1)
P 		84
avr 197.2
(-2.8) 		251.1
(3) 		229.3
(0.6) 		195.5
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 171.6
(-0.6)
P 		173.6
(-0.5)
P 		281.2
(3)
P 		219.7
(1)
P 		189.9
(0)
P 		96.8
(-3)
P 		184
B 189
(0.4)
P 		192.8
(0.8)
P 		214.9
(3)
P 		195.2
(1)
P 		198.3
(1.4)
P 		154.5
(-3)
P 		60
C 241.1
(1.6)
P 		219.4
(-2.3)
P 		249
(3)
P 		217.1
(-2.8)
P 		215.8
(-3)
P 		233.4
(0.2)
P 		33
avr 200.6
(-0.3) 		195.3
(-0.7) 		248.4
(3) 		210.7
(0.4) 		201.3
(-0.3) 		161.6
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 81.7
(3)
P 		42.8
(-1.4)
P 		75.4
(2.3)
P 		28.9
(-3)
P 		53
B 58.2
(0.8)
P 		71.9
(3)
P 		50.7
(-0.5)
P 		35.3
(-3)
P 		37
C 61.1
(0.7)
P 		76.1
(3)
P 		63
(1)
P 		37.7
(-3)
P 		38
avr 67
(3) 		63.6
(2.4) 		63
(2.3) 		34
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 31.6
(-1.7)
P 		61.7
(3)
P 		61.2
(2.9)
P 		55.7
(2.1)
P 		57.3
(2.3)
P 		23.6
(-3)
P 		38
B 65.8
(-0.1)
P 		64.2
(-0.4)
P 		52.2
(-2.9)
P 		51.7
(-3)
P 		80.6
(3)
P 		57.6
(-1.8)
P 		29
C 89.4
(3)
P 		66.9
(0)
P 		63.4
(-0.4)
P 		43.7
(-3)
P 		69.8
(0.4)
P 		78.1
(1.5)
P 		46
avr 62.3
(0.8) 		64.3
(1.4) 		58.9
(-0.3) 		50.4
(-3) 		69.2
(3) 		53.1
(-2.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.470
Sequence Type Exemplar sequence
Representative Public ID C47B2.9 NCBI
Target Description C47B2.9 /REP_DB=WormBase Gene ID /WP=CE23600 /TR=Q9U3L4 /GB=CAB54199.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060876 NCBI Caenorhabditis elegans C47B2.9 (C47B2.9) mRNA, complete cds. 11/11 None
SNAP00000041236 ENSEMBL cdna:SNAP chromosome:CEL140:I:12986959:12991992:1 10/11 None
GENEFINDER00000041238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12988691:12991992:1 11/11 None
C47B2.9 ENSEMBL cdna:known chromosome:CEL140:I:12991145:12991868:1 gene:C47B2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12991075-12991799(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47B2.9
Entrez Gene 173173 Entrez gene
SwissProt Q9U3L4 EMBL-EBI
WormBase CE23600 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16862 Hypothetical protein C47B2.7b [Caenorhabditis elegans] ref|NP_493275.1| C47B2.7b [Caenorhabditis elegans] 1.0E-173
blast CAB16863 Hypothetical protein C47B2.7a [Caenorhabditis elegans] ref|NP_493276.1| C47B2.7a [Caenorhabditis elegans] 1.0E-173
blast CAE63467 Hypothetical protein CBG07934 [Caenorhabditis briggsae] 1.0E-128
blast CAB16863 Hypothetical protein C47B2.7a [Caenorhabditis elegans] ref|NP_493276.1| C47B2.7a [Caenorhabditis elegans] 1.0E-113
blast CAB54199 Hypothetical protein C47B2.9 [Caenorhabditis elegans] ref|NP_493277.1| C47B2.9 [Caenorhabditis elegans] 7.0E-71
blast CAB16862 Hypothetical protein C47B2.7b [Caenorhabditis elegans] ref|NP_493275.1| C47B2.7b [Caenorhabditis elegans] 4.0E-66
blast CAB54199 Hypothetical protein C47B2.9 [Caenorhabditis elegans] ref|NP_493277.1| C47B2.9 [Caenorhabditis elegans] 1.0E-59
blast CAE63466 Hypothetical protein CBG07933 [Caenorhabditis briggsae] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002942 EMBL-EBI RNA-binding S4 1.1E-12
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.0E-10
Pfam IPR000795 EMBL-EBI Protein synthesis factor, GTP-binding 4.1E-11
Pfam IPR002942 EMBL-EBI RNA-binding S4 2.3E-7
Pfam IPR004161 EMBL-EBI Elongation factor Tu, domain 2 7.0E-10
Pfam IPR002942 EMBL-EBI RNA-binding S4 1.1E-12
Sequence
Target Sequence 
>C. ELEGANS:178559_AT
gatttctcggcgtactttgacaacaacatcggctcttttcaacaaaaagaagcccacgtc
atcttcacgtggtggtagccacgtggatgtgggcgatgatggactaccgaaagactacaa
attgaagactctgcgagccggaagccgacgattagacacttttgtgaatcgagccactgg
acagagcagcagcgaagtcgtcaagcttatcatgcagggaaaagtccgagtgaatgagga
ggtgtacacgaagaaagcctataatgtctgccaggaagatgtcgtagaaatctggaaatc
accattcgccgacaatgccgcgttggcaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTCGGCGTACTTTGACAACA 65 429 33 Antisense
TTTGACAACAACATCGGCTCTTTTC 91 667 48 Antisense
GAAGCCCACGTCATCTTCACGTGGT 664 343 81 Antisense
GGATGTGGGCGATGATGGACTACCG 643 511 117 Antisense
TTGAAGACTCTGCGAGCCGGAAGCC 579 701 154 Antisense
AGCCGGAAGCCGACGATTAGACACT 694 83 168 Antisense
GACACTTTTGTGAATCGAGCCACTG 298 367 187 Antisense
GAGCCACTGGACAGAGCAGCAGCGA 348 385 203 Antisense
GCGAAGTCGTCAAGCTTATCATGCA 527 287 224 Antisense
AATCTGGAAATCACCATTCGCCGAC 116 169 321 Antisense
GCCGACAATGCCGCGTTGGCAAACG 333 285 340 Antisense
Sequence Source Affymetrix Proprietary Database