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[178558_at]

Description F57G9.3 /REP_DB=WormBase Gene ID /WP=CE17919 /TR=O62268 /GB=CAB05751.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 41.3
(-2.5)
A 		36.5
(-3)
A 		76.6
(0.9)
A 		98.3
(3)
A 		62
B 72
(3)
A 		59.5
(1.8)
A 		7.1
(-3)
A 		57.9
(1.7)
A 		65
C 40
(-3)
A 		65.1
(-1.6)
A 		49
(-2.5)
A 		148.3
(3)
A 		108
avr 51.1
(-2.3) 		53.7
(-2) 		44.2
(-3) 		101.5
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 7.1
(-3)
A 		24.4
(-2.1)
A 		63.9
(0)
A 		44.1
(-1)
A 		19.2
(-2.4)
A 		120.3
(3)
A 		113
B 44.9
(-0.6)
A 		18.9
(-2.3)
A 		9.4
(-2.9)
A 		8.6
(-3)
A 		42.4
(-0.7)
A 		98.7
(3)
A 		90
C 26.7
(-2.4)
A 		65.3
(0.7)
A 		64.1
(0.6)
A 		70.4
(1.1)
A 		19.5
(-3)
A 		93.9
(3)
A 		74
avr 26.2
(-3) 		36.2
(-2.2) 		45.8
(-1.5) 		41
(-1.9) 		27
(-2.9) 		104.3
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 15
(0.5)
A 		7.9
(-3)
A 		20
(3)
A 		14.4
(0.2)
A 		12
B 23
(3)
A 		14.7
(0.7)
A 		1.6
(-3)
A 		12.3
(0)
A 		21
C 13.2
(-3)
A 		18.7
(-0.2)
A 		17.1
(-1)
A 		25
(3)
A 		12
avr 17.1
(2.9) 		13.8
(-1.7) 		12.9
(-3) 		17.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.3
(-3)
A 		8.7
(-1.4)
A 		13.9
(-0.3)
A 		11.2
(-0.9)
A 		5.8
(-2)
A 		29.3
(3)
A 		28
B 15.6
(-0.7)
A 		6.3
(-2.3)
A 		2.3
(-3)
A 		2.3
(-3)
A 		17.2
(-0.4)
A 		36.8
(3)
A 		35
C 9.9
(-2.1)
A 		19.9
(0.3)
A 		16.3
(-0.6)
A 		14.1
(-1.1)
A 		6.3
(-3)
A 		31.4
(3)
A 		25
avr 8.9
(-3) 		11.6
(-2.3) 		10.8
(-2.5) 		9.2
(-2.9) 		9.8
(-2.8) 		32.5
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2811
Sequence Type Exemplar sequence
Representative Public ID F57G9.3 NCBI
Target Description F57G9.3 /REP_DB=WormBase Gene ID /WP=CE17919 /TR=O62268 /GB=CAB05751.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064233(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064233 NCBI Caenorhabditis elegans F57G9.3 (F57G9.3) mRNA, complete cds. 11/11 None
SNAP00000038200 ENSEMBL cdna:SNAP chromosome:CEL140:II:12409295:12410092:-1 11/11 None
F57G9.3 ENSEMBL cdna:known chromosome:CEL140:II:12409295:12410092:-1 gene:F57G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12409291-12410089(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57G9.3
Entrez Gene 174879 Entrez gene
SwissProt O62268 EMBL-EBI
WormBase CE17919 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05751 Hypothetical protein F57G9.3 [Caenorhabditis elegans] ref|NP_496634.1| F57G9.3 [Caenorhabditis elegans] 1.0E-133
blast CAB05753 Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] emb|CAA19553.1| Hypothetical protein Y57A10C.1 [Caenorhabditis elegans] ref|NP_496635.1| Y57A10C.1 [Caenorhabditis elegans] 1.0E-47
blast AAG37970 Hypothetical protein Y82E9BL.3 [Caenorhabditis elegans] ref|NP_497391.1| Y82E9BL.3 [Caenorhabditis elegans] 5.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496634.1 6 7-29,39-61,81-100,104-126,152-174,179-201
F57G9.3 6 7-29,39-61,81-100,104-126,152-174,179-201
SNAP00000038200 6 7-29,39-61,81-100,104-126,152-174,179-201
Sequence
Target Sequence 
>C. ELEGANS:178558_AT
gttcacctctaccatgtatacgtacaccagaagaagaacagctatccattcaaacgtttc
acattaatcaaggatttatagcagtaacatcggtcattgcaaatgttttacttccagtgg
tcatgctacttggccctaaaaatgtttctagcataataatttgtctcttcatctactgcc
tgctggtcgatcagcttattgggtttgcagttgaaatgatacacttcgcatcaccgattc
agtacacgtttcctaaaaccatcaaactctctaaccctcagaaatacacaattctcgcat
tctcggttatcatggaattttatcatttttacatgtgctgctggaatatttcctcaaacc
tctggccgatcaatatacttttatgtaccgcaattaatattatggaaataccagcgatca
ttgttgcgttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCACCTCTACCATGTATACGTAC 376 445 179 Antisense
CAGCTATCCATTCAAACGTTTCACA 504 203 217 Antisense
GGTCATGCTACTTGGCCCTAAAAAT 651 503 297 Antisense
TAATAATTTGTCTCTTCATCTACTG 397 635 332 Antisense
TACTGCCTGCTGGTCGATCAGCTTA 438 647 352 Antisense
ATACACTTCGCATCACCGATTCAGT 235 25 397 Antisense
TCACCGATTCAGTACACGTTTCCTA 32 625 409 Antisense
ATCAAACTCTCTAACCCTCAGAAAT 398 27 439 Antisense
AATTCTCGCATTCTCGGTTATCATG 37 177 468 Antisense
AAACCTCTGGCCGATCAATATACTT 623 125 534 Antisense
TACCAGCGATCATTGTTGCGTTCTA 441 651 587 Antisense
Sequence Source Affymetrix Proprietary Database