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[178556_at]

Description R06C7.6 /REP_DB=WormBase Gene ID /WP=CE06249 /TR=Q21775 /GB=CAA95844.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 64      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 161.4
(0.5)
P 		132.7
(-0.9)
P 		89.3
(-3)
A 		213.6
(3)
M 		124
B 104.4
(-3)
P 		120.1
(-1.7)
P 		150.6
(0.9)
P 		174.9
(3)
P 		71
C 153.6
(-1.1)
P 		112.3
(-2.8)
P 		108.1
(-3)
P 		249
(3)
P 		141
avr 139.8
(-1.5) 		121.7
(-2.6) 		116
(-3) 		212.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 106.4
(-3)
A 		140.7
(-1.8)
P 		281.6
(3)
P 		180
(-0.5)
A 		142.6
(-1.8)
A 		149.3
(-1.5)
A 		175
B 128.9
(-3)
P 		174.6
(-0.9)
P 		261.4
(3)
P 		176.4
(-0.8)
P 		197.9
(0.1)
M 		243.1
(2.2)
P 		133
C 145.4
(-3)
M 		212.6
(0.2)
P 		175.6
(-1.5)
P 		236.2
(1.4)
P 		153.9
(-2.6)
A 		270.2
(3)
P 		125
avr 126.9
(-3) 		176
(-0.4) 		239.5
(3) 		197.5
(0.8) 		164.8
(-1) 		220.9
(2) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 58.8
(3)
P 		28.8
(-2.1)
P 		23.4
(-3)
A 		31.3
(-1.7)
M 		35
B 33.3
(-0.2)
P 		29.7
(-3)
P 		34.9
(1.1)
P 		37.3
(3)
P 		8
C 50.8
(3)
P 		32.3
(-3)
P 		37.7
(-1.2)
P 		42
(0.1)
P 		19
avr 47.6
(3) 		30.3
(-3) 		32
(-2.4) 		36.9
(-0.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 19.6
(-3)
A 		50
(1.4)
P 		61.3
(3)
P 		45.7
(0.8)
A 		43
(0.4)
A 		36.4
(-0.6)
A 		42
B 44.8
(-3)
P 		58.1
(-1.3)
P 		63.5
(-0.6)
P 		46.7
(-2.8)
P 		80.4
(1.7)
M 		90.6
(3)
P 		46
C 53.9
(-1.8)
M 		64.9
(-0.3)
P 		44.7
(-3)
P 		47.5
(-2.6)
P 		49.8
(-2.3)
A 		90.4
(3)
P 		46
avr 39.4
(-3) 		57.7
(0.3) 		56.5
(0.1) 		46.6
(-1.7) 		57.7
(0.3) 		72.5
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2108
Sequence Type Exemplar sequence
Representative Public ID R06C7.6 NCBI
Target Description R06C7.6 /REP_DB=WormBase Gene ID /WP=CE06249 /TR=Q21775 /GB=CAA95844.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059647 NCBI Caenorhabditis elegans R06C7.6 (R06C7.6) mRNA, complete cds. 11/11 None
SNAP00000036114 ENSEMBL cdna:SNAP chromosome:CEL140:I:7253225:7254938:-1 11/11 None
GENEFINDER00000036127 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7254272:7254938:-1 11/11 None
R06C7.6 ENSEMBL cdna:known chromosome:CEL140:I:7254272:7254938:-1 gene:R06C7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7254202-7254869(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06C7.6
Entrez Gene 187641 Entrez gene
SwissProt Q21775 EMBL-EBI
WormBase CE06249 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12179_AT expressed protein at
ATH1-121501:260499_AT expressed protein at
CANINE:1588357_AT similar to CG8253-PA cfa
CANINE_2:CFA.3330.1.S1_AT similar to CG8253-PA cfa
CANINE_2:CFAAFFX.2403.1.S1_S_AT similar to CG8253-PA cfa
DROSOPHILA_2:1635089_AT dm
DROSGENOME1:141221_AT dm
CHICKEN:GGAAFFX.10482.1.S1_AT similar to hypothetical protein FLJ10204 gga
HU35KSUBA:RC_AA258182_AT chromosome 8 open reading frame 32 hs
HG-U133A:219060_AT chromosome 8 open reading frame 32 hs
HG-U133_PLUS_2:219060_AT chromosome 8 open reading frame 32 hs
HG-U133A_2:219060_AT chromosome 8 open reading frame 32 hs
U133_X3P:G8922280_3P_AT chromosome 8 open reading frame 32 hs
HG-U95B:48567_AT chromosome 8 open reading frame 32 hs
MOUSE430_2:1432489_A_AT RIKEN cDNA 2410187C16 gene mm
MOE430B:1432489_A_AT RIKEN cDNA 2410187C16 gene mm
MU11KSUBA:AA666971_F_AT RIKEN cDNA 2410187C16 gene mm
MG-U74BV2:162662_AT RIKEN cDNA 2410187C16 gene mm
MG-U74CV2:168326_AT RIKEN cDNA 2410187C16 gene mm
MOE430B:1434144_S_AT RIKEN cDNA 2410187C16 gene mm
MOUSE430_2:1434144_S_AT RIKEN cDNA 2410187C16 gene mm
RG-U34B:RC_AA946382_AT similar to hypothetical protein FLJ10204 (predicted) rn
RAE230B:1383461_AT similar to hypothetical protein FLJ10204 (predicted) rn
RAT230_2:1383461_AT similar to hypothetical protein FLJ10204 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA95844 Hypothetical protein R06C7.6 [Caenorhabditis elegans] ref|NP_492048.1| R06C7.6 [Caenorhabditis elegans] 1.0E-105
blast CAA95844 Hypothetical protein R06C7.6 [Caenorhabditis elegans] ref|NP_492048.1| R06C7.6 [Caenorhabditis elegans] 1.0E-104
blast CAE74233 Hypothetical protein CBG21918 [Caenorhabditis briggsae] 3.0E-57
blast CAE74233 Hypothetical protein CBG21918 [Caenorhabditis briggsae] 7.0E-57
blast NP_084010 hypothetical protein LOC76773 [Mus musculus] dbj|BAE29673.1| unnamed protein product [Mus musculus] gb|AAH51524.1| RIKEN cDNA 2410187C16 [Mus musculus] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:178556_AT
tcggccgaggaagcattgtatcaatcttgctattgtgaagaaaatgtctataagttgatt
gagaaaatagatgataaaaatggaatatttgcgattattatatcaaacgactgtaaaatg
ataccactgtggaaacaaaaggctgctaaaagtatcaatggtcatgttctctgggattat
cacgtcattgctattgaaaaggaaaaaaacgggtcaaaagtctacgatttggattctaca
ctcgaatggagttgtgatttcttagaatattgggaaaaaactatgaatctcgcagaaatg
gctcagcgtgacactaaattcagaagaaaatttcgtgtaattccaggagaaaactacata
tccttgctctcatctgatcgatctcatatgctttcgaagaatggagtatacctaaagcca
cctcctgaatggccattaataaattctcataaaccatcgaatttgatggaactgatccga
atgtcagaacaaatcgagaacacgacggttatggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCCGAGGAAGCATTGTATCAAT 487 607 19 Antisense
ATCAATGGTCATGTTCTCTGGGATT 673 25 172 Antisense
TCTGGGATTATCACGTCATTGCTAT 365 607 188 Antisense
TACGATTTGGATTCTACACTCGAAT 85 647 241 Antisense
ATGAATCTCGCAGAAATGGCTCAGC 360 43 301 Antisense
ATGGCTCAGCGTGACACTAAATTCA 443 53 316 Antisense
GAAAACTACATATCCTTGCTCTCAT 317 355 367 Antisense
ATCTGATCGATCTCATATGCTTTCG 551 33 390 Antisense
GGAGTATACCTAAAGCCACCTCCTG 20 517 421 Antisense
AAGCCACCTCCTGAATGGCCATTAA 72 149 433 Antisense
ATCGAGAACACGACGGTTATGGACG 212 35 511 Antisense
Sequence Source Affymetrix Proprietary Database