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[178555_at]

Description F13E9.8 /REP_DB=WormBase Gene ID /WP=CE05610 /TR=Q19406 /GB=CAA93404.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 59      4grp_total > 12      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2932
1 2 3 4 range
A 520.8
(-2.5)
P 		570.2
(-2.4)
M 		262.4
(-3)
A 		3168
(3)
P 		2906
B 1727.5
(0.3)
P 		393.3
(-2.7)
A 		262.5
(-3)
A 		2944.7
(3)
P 		2682
C 648.7
(-1.5)
P 		363.2
(-2.5)
A 		236.4
(-3)
A 		1924.5
(3)
P 		1688
avr 965.7
(-1.2) 		442.2
(-2.5) 		253.8
(-3) 		2679.1
(3) 		2425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 376.2
(0.6)
A 		292.5
(-0.7)
P 		142.4
(-3)
P 		213
(-1.9)
P 		193.3
(-2.2)
A 		537.3
(3)
P 		395
B 253
(-1)
P 		181.3
(-1.8)
A 		256.9
(-0.9)
P 		79.5
(-3)
A 		319.3
(-0.2)
P 		589.4
(3)
P 		510
C 472.8
(2.4)
P 		209.6
(-1.7)
P 		146
(-2.7)
M 		124.2
(-3)
A 		272.8
(-0.7)
P 		511.5
(3)
P 		387
avr 367.3
(0.4) 		227.8
(-1.7) 		181.8
(-2.4) 		138.9
(-3) 		261.8
(-1.2) 		546.1
(3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 567
1 2 3 4 range
A 189.6
(-1.2)
P 		123.8
(-2.2)
M 		68.6
(-3)
A 		463.7
(3)
P 		395
B 550.9
(2.2)
P 		97.1
(-2.6)
A 		60.8
(-3)
A 		627.5
(3)
P 		567
C 214.8
(0.3)
P 		104.4
(-2.5)
A 		82.4
(-3)
A 		324.5
(3)
P 		242
avr 318.4
(0.7) 		108.4
(-2.4) 		70.6
(-3) 		471.9
(3) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 69.3
(-0.7)
A 		104
(1.4)
P 		31
(-3)
P 		54
(-1.6)
P 		58.3
(-1.4)
A 		130.8
(3)
P 		100
B 88
(-1)
P 		60.4
(-1.8)
A 		62.4
(-1.8)
P 		21
(-3)
A 		129.7
(0.3)
P 		219.8
(3)
P 		199
C 175.3
(3)
P 		64
(-1.4)
P 		37.2
(-2.5)
M 		25
(-3)
A 		88.3
(-0.5)
P 		171.2
(2.8)
P 		150
avr 110.9
(0.3) 		76.1
(-1.2) 		43.5
(-2.6) 		33.3
(-3) 		92.1
(-0.5) 		173.9
(3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178555_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10182
Sequence Type Exemplar sequence
Representative Public ID F13E9.8 NCBI
Target Description F13E9.8 /REP_DB=WormBase Gene ID /WP=CE05610 /TR=Q19406 /GB=CAA93404.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069622 NCBI Caenorhabditis elegans F13E9.8 (F13E9.8) mRNA, complete cds. 11/11 None
F13E9.8 ENSEMBL cdna:known chromosome:CEL140:IV:10887171:10894325:-1 gene:F13E9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058817 1/11 Cross Hyb Matching Probes None
SNAP00000017045 3/11 Cross Hyb Matching Probes None
SNAP00000017047 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017054 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017057 3/11 Cross Hyb Matching Probes None
C32E8.4 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10887176-10894331(-) 93.45 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E9.8
Entrez Gene 184426 Entrez gene
SwissProt Q19406 EMBL-EBI
WormBase CE05610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93404 Hypothetical protein F13E9.8 [Caenorhabditis elegans] ref|NP_502023.1| F13E9.8 [Caenorhabditis elegans] 1.0E-112
blast CAE61949 Hypothetical protein CBG05948 [Caenorhabditis briggsae] 6.0E-37
blast CAE61950 Hypothetical protein CBG05949 [Caenorhabditis briggsae] 7.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.3E-20
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 4.5E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502023.1 1 555-577
F13E9.8 1 555-577
Sequence
Target Sequence 
>C. ELEGANS:178555_AT
tcagccaccaccaagtggaccaggcggacaacagaatggattagggccacaaggaggaac
aactgcagcttcaggacaaccacaaccaccacaaccaggacaaccaggagggcaacaaac
tggttcaggaccaggagccggacaacaaccgggacaaggacaaggaggaaacggtggaat
gggtggacagcaaggtggacaaccaggacaaggaaatggtggtatgggaggaggacaaca
agggggaaatcaaggaaataacccaggaaactttggaaaaggattttttcaaattttcaa
ttttcagctcgatttaaaaacattcaatgtcgatggacgaccagatttggtacaagtttc
ggttcgtttaaactcgaagaacagtcttgaccaacacgagatgtattcacttttggcgct
cctcttcgtcatcttcttctctggaagcactctgctcgttcaatgcgttggaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCACCACCAAGTGGACCAGGC 564 625 1275 Antisense
GGACCAGGCGGACAACAGAATGGAT 296 517 1291 Antisense
GGGCCACAAGGAGGAACAACTGCAG 55 493 1318 Antisense
ACAACTGCAGCTTCAGGACAACCAC 687 111 1333 Antisense
GGAGGGCAACAAACTGGTTCAGGAC 12 515 1381 Antisense
GACCAGGAGCCGGACAACAACCGGG 276 383 1403 Antisense
GGACAGCAAGGTGGACAACCAGGAC 612 525 1459 Antisense
TTTTCAATTTTCAGCTCGATTTAAA 403 675 1568 Antisense
GAACAGTCTTGACCAACACGAGATG 513 351 1653 Antisense
GAGATGTATTCACTTTTGGCGCTCC 121 397 1672 Antisense
TCTGCTCGTTCAATGCGTTGGAAAG 679 607 1725 Antisense
Sequence Source Affymetrix Proprietary Database