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[178553_at]

Description C44H9.5 /REP_DB=WormBase Gene ID /WP=CE05421 /TR=Q18634 /GB=CAA99787.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 28.8
(-3)
A 		37.5
(-1.2)
A 		30.5
(-2.6)
A 		57.5
(3)
A 		29
B 48.7
(1.6)
A 		24.3
(-1.2)
A 		9
(-3)
A 		61.1
(3)
P 		52
C 27.1
(-3)
A 		46.2
(-0.6)
A 		35.2
(-2)
A 		75.3
(3)
A 		48
avr 34.9
(-1.5) 		36
(-1.3) 		24.9
(-3) 		64.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 65.4
(3)
A 		52.9
(1.8)
P 		53.7
(1.9)
A 		26.7
(-0.7)
A 		30.1
(-0.3)
A 		1.9
(-3)
A 		64
B 32.6
(2.4)
A 		14.2
(-0.8)
A 		36.3
(3)
P 		1.6
(-3)
A 		23.4
(0.8)
A 		15.7
(-0.6)
A 		35
C 29.9
(1.7)
A 		37.4
(3)
P 		2.8
(-3)
A 		4
(-2.8)
A 		4.3
(-2.7)
A 		27
(1.2)
A 		35
avr 42.6
(3) 		34.8
(1.5) 		30.9
(0.8) 		10.8
(-3) 		19.3
(-1.4) 		14.9
(-2.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.5
(3)
A 		8.1
(-2.8)
A 		8
(-3)
A 		8.4
(-2)
A 		3
B 15.5
(3)
A 		6
(-1.3)
A 		2.1
(-3)
A 		13
(1.9)
P 		13
C 9
(-3)
A 		13.3
(3)
A 		12.3
(1.6)
A 		12.7
(2.2)
A 		4
avr 11.7
(3) 		9.1
(-0.7) 		7.5
(-3) 		11.4
(2.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.1
(0.8)
A 		18.8
(3)
P 		11.7
(0.7)
A 		6.8
(-0.9)
A 		9.1
(-0.2)
A 		0.5
(-3)
A 		18
B 11.3
(3)
A 		4.7
(-0.6)
A 		8.8
(1.6)
P 		0.4
(-3)
A 		9.5
(2)
A 		5.9
(0)
A 		11
C 11.1
(2.8)
A 		11.4
(3)
P 		0.7
(-3)
A 		0.8
(-2.9)
A 		1.4
(-2.6)
A 		9
(1.7)
A 		11
avr 11.5
(2.9) 		11.6
(3) 		7.1
(-0) 		2.7
(-3) 		6.7
(-0.3) 		5.1
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13815
Sequence Type Exemplar sequence
Representative Public ID C44H9.5 NCBI
Target Description C44H9.5 /REP_DB=WormBase Gene ID /WP=CE05421 /TR=Q18634 /GB=CAA99787.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073815 NCBI Caenorhabditis elegans C44H9.5 (C44H9.5) mRNA, complete cds. 11/11 None
SNAP00000031462 ENSEMBL cdna:SNAP chromosome:CEL140:V:12849508:12852387:-1 10/11 None
GENEFINDER00000031468 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12849508:12852387:-1 10/11 None
C44H9.5 ENSEMBL cdna:known chromosome:CEL140:V:12851255:12852387:-1 gene:C44H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12851254-12852387(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44H9.5
Entrez Gene 183464 Entrez gene
SwissProt Q18634 EMBL-EBI
WormBase CE05421 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99788 Hypothetical protein C44H9.8 [Caenorhabditis elegans] ref|NP_506215.2| C44H9.8 [Caenorhabditis elegans] 0.0
blast CAA99787 Hypothetical protein C44H9.5 [Caenorhabditis elegans] ref|NP_506216.1| C44H9.5 [Caenorhabditis elegans] 1.0E-118
blast CAA99787 Hypothetical protein C44H9.5 [Caenorhabditis elegans] ref|NP_506216.1| C44H9.5 [Caenorhabditis elegans] 3.0E-98
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 1.0E-79
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 2.0E-77
blast CAE64730 Hypothetical protein CBG09517 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031462 1 454-476
GENEFINDER00000031468 1 451-473
Sequence
Target Sequence 
>C. ELEGANS:178553_AT
tcaaatacccaaatgctctctatccagctagtttatcccgaggaggattccgaaatgaat
gtccatatctttcgaaacgaattgatttctgtgtaccaaaatacgaggattgctttggac
aattgagatctgttgaggactgcaaattggattactgcacttgtatacacgtcagtgaag
ctaccgaaacttgccagaaacattttggagactcttgtcagtcggtgcgaacgaaaggag
aagtataccgaaagacgatcgccgaaaatcgaacgaaaacagttgtgaataaactagaag
caatttttatgaaactctcagatgcgttttctagtctgttaaaaaattgtggcgtggtgt
cagaaatggaagaaaaactacatcaagctgtcagccaacttgacactcagaatccacttt
tgaacttgactcttaagtacttaattcttcgtaatctcgagtctcaaatgctcaactcta
caacatgccaaaattcgaagacgtcattccaagaaactctggttaaacacacgaagttaa
aaaaggctattttcaacacaaatctcaaattttgcacacttgtccatacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATACCCAAATGCTCTCTATCC 428 629 83 Antisense
TCTCTATCCAGCTAGTTTATCCCGA 319 613 99 Antisense
GGATTACTGCACTTGTATACACGTC 337 509 231 Antisense
GTGAAGCTACCGAAACTTGCCAGAA 203 481 257 Antisense
GAGACTCTTGTCAGTCGGTGCGAAC 321 391 290 Antisense
AACTCTCAGATGCGTTTTCTAGTCT 523 141 395 Antisense
AGCTGTCAGCCAACTTGACACTCAG 294 79 468 Antisense
GAATCCACTTTTGAACTTGACTCTT 661 329 492 Antisense
AATTCTTCGTAATCTCGAGTCTCAA 491 175 525 Antisense
GTCTCAAATGCTCAACTCTACAACA 671 469 543 Antisense
AATTTTGCACACTTGTCCATACAGA 542 175 650 Antisense
Sequence Source Affymetrix Proprietary Database