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[178552_at]

Description C33B4.2 /REP_DB=WormBase Gene ID /WP=CE01507 /TR=Q09492 /GB=CAA88323.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 42      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 29.4
(-3)
A 		91.7
(1.3)
P 		81.5
(0.6)
A 		117
(3)
A 		88
B 35.7
(-3)
A 		163.4
(3)
P 		107.3
(0.4)
M 		58.1
(-1.9)
A 		128
C 30.5
(-2.9)
A 		135.8
(3)
P 		90.8
(0.5)
P 		28.6
(-3)
A 		107
avr 31.9
(-3) 		130.3
(3) 		93.2
(0.7) 		67.9
(-0.8) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 64.2
(0.3)
A 		86.9
(2.2)
P 		57
(-0.3)
A 		96.5
(3)
A 		74.5
(1.2)
A 		25
(-3)
A 		72
B 60.3
(0.2)
M 		82.1
(2.9)
M 		33.6
(-3)
A 		83.1
(3)
P 		62.6
(0.5)
M 		45.3
(-1.6)
P 		50
C 39.2
(-0.2)
A 		72.3
(2.5)
A 		70
(2.3)
A 		78.3
(3)
P 		59.9
(1.5)
P 		5.2
(-3)
A 		73
avr 54.6
(-0.1) 		80.4
(2.4) 		53.5
(-0.2) 		86
(3) 		65.7
(1) 		25.2
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 10.7
(-3)
A 		19.9
(2.2)
P 		21.3
(3)
A 		17.1
(0.6)
A 		11
B 11.4
(-3)
A 		40.4
(3)
P 		24.9
(-0.2)
M 		12.4
(-2.8)
A 		29
C 10.1
(-2.1)
A 		39
(3)
P 		31.6
(1.7)
P 		4.8
(-3)
A 		34
avr 10.7
(-3) 		33.1
(3) 		25.9
(1.1) 		11.4
(-2.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.8
(-1.6)
A 		30.9
(3)
P 		12.4
(-1.5)
A 		24.5
(1.5)
A 		22.5
(1)
A 		6.1
(-3)
A 		25
B 21
(1)
M 		27.3
(3)
M 		8.2
(-3)
A 		22
(1.3)
P 		25.4
(2.4)
M 		16.9
(-0.3)
P 		19
C 14.5
(0.8)
A 		22.1
(3)
A 		17.8
(1.7)
A 		15.8
(1.1)
P 		19.4
(2.2)
P 		1.7
(-3)
A 		20
avr 15.8
(-0.5) 		26.8
(3) 		12.8
(-1.5) 		20.8
(1.1) 		22.4
(1.6) 		8.2
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2954
Sequence Type Exemplar sequence
Representative Public ID C33B4.2 NCBI
Target Description C33B4.2 /REP_DB=WormBase Gene ID /WP=CE01507 /TR=Q09492 /GB=CAA88323.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064029 NCBI Caenorhabditis elegans C33B4.2 (C33B4.2) mRNA, complete cds. 11/11 None
SNAP00000020554 ENSEMBL cdna:SNAP chromosome:CEL140:II:11368605:11371979:-1 11/11 None
GENEFINDER00000020560 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11370261:11371979:-1 11/11 None
C33B4.2 ENSEMBL cdna:known chromosome:CEL140:II:11370221:11371979:-1 gene:C33B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11370257-11371976(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33B4.2
Entrez Gene 183149 Entrez gene
SwissProt Q09492 EMBL-EBI
WormBase CE01507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88323 Hypothetical protein C33B4.2 [Caenorhabditis elegans] ref|NP_496430.1| C33B4.2 [Caenorhabditis elegans] 1.0E-165
blast CAA88323 Hypothetical protein C33B4.2 [Caenorhabditis elegans] ref|NP_496430.1| C33B4.2 [Caenorhabditis elegans] 1.0E-163
blast CAE59521 Hypothetical protein CBG02915 [Caenorhabditis briggsae] 1.0E-145
blast CAE59521 Hypothetical protein CBG02915 [Caenorhabditis briggsae] 1.0E-144
blast CAE59998 Hypothetical protein CBG03492 [Caenorhabditis briggsae] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:178552_AT
agacggtccctgatgtgagtcttcctggacagacggcttcgttcactggacgatccgcat
tcaacccgtttactcacatggtttccgctgtctacactgaagatctcgtcgacgcctggg
gtgctggattcgcggttaatggagtcaacaatcatggattgaacgttcgtaaaaatttcg
acgcatttgcggatgctccattgagcagcagcgacggaatgtatcagccttttttgtcgg
cggcgtcgattggttctgagtatgatttttcaaagattagggaagtgtctggaaacttca
atttgccgattcccggggtcaatgagttgtttgattttgatggaaggtttatggttaagg
gaggaggaaacggtatcctcaacagtgccatggagttcccattgaccctttcggatccga
atgaacgtgctccataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGGTCCCTGATGTGAGTCTTCC 338 69 338 Antisense
TGAGTCTTCCTGGACAGACGGCTTC 498 565 353 Antisense
TTCACTGGACGATCCGCATTCAACC 446 687 379 Antisense
CATTCAACCCGTTTACTCACATGGT 43 215 395 Antisense
GTTTCCGCTGTCTACACTGAAGATC 308 451 418 Antisense
TGTATCAGCCTTTTTTGTCGGCGGC 159 559 557 Antisense
CAATTTGCCGATTCCCGGGGTCAAT 80 179 636 Antisense
GGAAACGGTATCCTCAACAGTGCCA 274 527 703 Antisense
CAGTGCCATGGAGTTCCCATTGACC 59 209 720 Antisense
CCATTGACCCTTTCGGATCCGAATG 623 267 736 Antisense
GATCCGAATGAACGTGCTCCATACA 106 417 751 Antisense
Sequence Source Affymetrix Proprietary Database