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[178551_at] 7TM chemoreceptor, srw family

Description F14F8.7 /REP_DB=WormBase Gene ID /WP=CE18591 /TR=Q9XU31 /GB=CAB07191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 27      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.7
(-2.9)
A 		7.1
(-0.7)
A 		2.4
(-3)
A 		14.9
(3)
A 		13
B 3.2
(-3)
A 		46.3
(3)
A 		9.1
(-2.2)
A 		5.8
(-2.6)
A 		43
C 4.1
(-2.7)
A 		2.4
(-3)
A 		4.8
(-2.6)
A 		37.7
(3)
A 		35
avr 3.3
(-3) 		18.6
(2.7) 		5.4
(-2.2) 		19.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		4.6
(-2.1)
A 		17.3
(3)
A 		11.4
(0.6)
A 		2.5
(-3)
A 		3.9
(-2.4)
A 		15
B 7.7
(-2)
A 		15.9
(1.1)
A 		9.3
(-1.4)
A 		4.9
(-3)
A 		21.1
(3)
A 		12.2
(-0.3)
A 		16
C 7.8
(0.5)
A 		7
(-0)
A 		6.2
(-0.5)
A 		4.6
(-1.5)
A 		2.1
(-3)
A 		11.9
(3)
A 		10
avr 6.2
(-3) 		9.2
(0.8) 		10.9
(3) 		7
(-2) 		8.6
(0.1) 		9.3
(1) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-1.5)
A 		1.5
(0.4)
A 		0.6
(-3)
A 		2.2
(3)
A 		2
B 1
(-3)
A 		11.4
(3)
A 		2.1
(-2.4)
A 		1.2
(-2.9)
A 		10
C 1.4
(-2.3)
A 		0.7
(-3)
A 		1.7
(-1.9)
A 		6.4
(3)
A 		6
avr 1.1
(-3) 		4.5
(3) 		1.5
(-2.3) 		3.3
(0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.6
(-1.1)
A 		3.8
(3)
A 		2.9
(1.3)
A 		0.8
(-2.6)
A 		0.9
(-2.4)
A 		3
B 2.7
(-1.8)
A 		5.3
(0.3)
A 		2.3
(-2.2)
A 		1.3
(-3)
A 		8.6
(3)
A 		4.5
(-0.4)
A 		7
C 2.9
(1)
A 		2.1
(-0.5)
A 		1.6
(-1.4)
A 		0.9
(-2.6)
A 		0.7
(-3)
A 		4
(3)
A 		3
avr 2.1
(-1.6) 		3
(1.6) 		2.6
(0.2) 		1.7
(-3) 		3.4
(3) 		3.1
(1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14580
Sequence Type Exemplar sequence
Representative Public ID F14F8.7 NCBI
Target Description F14F8.7 /REP_DB=WormBase Gene ID /WP=CE18591 /TR=Q9XU31 /GB=CAB07191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074823 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-36) (srw-36) mRNA, complete cds. 11/11 None
F14F8.7 ENSEMBL cdna:known chromosome:CEL140:V:16685768:16687460:1 gene:F14F8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022531 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16685767-16687460(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-36
Ensembl F14F8.7
Entrez Gene 184481 Entrez gene
SwissProt Q9XU31 EMBL-EBI
WormBase CE18591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07191 Hypothetical protein F14F8.7 [Caenorhabditis elegans] ref|NP_507224.1| Serpentine Receptor, class W family member (srw-36) [Caenorhabditis elegans] 1.0E-169
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 9.0E-75
blast CAA16268 Hypothetical protein F19B2.3 [Caenorhabditis elegans] ref|NP_507888.1| Serpentine Receptor, class W family member (srw-39) [Caenorhabditis elegans] 2.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.9E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507224.1 5 25-47,60-82,115-137,158-180,224-246
F14F8.7 5 25-47,60-82,115-137,158-180,224-246
Sequence
Target Sequence 
>C. ELEGANS:178551_AT
tcctccttgatcaattctgttgccatagtgatgataacgtatttcactgctgcaatggca
ataattagaactcttgtgatcaaatttccacttgctaggcgcagcaaacgtctgatctac
tcaaaaaatggctcgaaaatcatgctaaccattattctagtcatctcacctttttggatc
atcaattttgctagtttaaacgtaattgagactggagtttgggtaccgccaaaaaattgc
aatggattttctaaaaacaatattgaaaaaatgtatggcattgagcaaacgggaatattt
ggtcaacttttttatttgatatttttcttaacagagactgtcctatttgaatttatccca
tcaattttacttctgatcaccacaatttgtttgattatcgagttgaggaaaaaccagaaa
aagaagacatcgataaagcaatatagatcaacgagacttgtggcagcaataaaagctgac
gtcactgttatagcatcatttttatccacgttaaacattgccactcatggaccgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCTTGATCAATTCTGTTGCCA 603 593 346 Antisense
TAACGTATTTCACTGCTGCAATGGC 556 635 380 Antisense
AAATTTCCACTTGCTAGGCGCAGCA 705 115 427 Antisense
GGCGCAGCAAACGTCTGATCTACTC 42 543 443 Antisense
AACCATTATTCTAGTCATCTCACCT 668 147 492 Antisense
GTCATCTCACCTTTTTGGATCATCA 355 467 505 Antisense
TGAGACTGGAGTTTGGGTACCGCCA 683 565 552 Antisense
GACTGTCCTATTTGAATTTATCCCA 342 375 681 Antisense
CAATTTTACTTCTGATCACCACAAT 178 181 707 Antisense
AGCTGACGTCACTGTTATAGCATCA 489 79 819 Antisense
AAACATTGCCACTCATGGACCGATA 535 127 858 Antisense
Sequence Source Affymetrix Proprietary Database