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[178549_at]

Description K07A1.3 /REP_DB=WormBase Gene ID /WP=CE11844 /TR=P90910 /GB=CAB03165.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_high_8_8 > 13      6grp_highest_nonorm > 81      6grp_total > 54      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 539
1 2 3 4 range
A 265.4
(-1.3)
P 		216.3
(-1.8)
P 		118.6
(-3)
M 		622.1
(3)
P 		504
B 173.4
(-2.5)
P 		209.6
(-2.1)
P 		133.2
(-3)
P 		657.6
(3)
P 		524
C 224.6
(-1.4)
P 		236.1
(-1.1)
P 		167.7
(-3)
P 		383.6
(3)
P 		216
avr 221.1
(-1.8) 		220.7
(-1.8) 		139.8
(-3) 		554.4
(3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 369.6
(3)
P 		318.9
(1.2)
P 		315.2
(1.1)
P 		227.1
(-2.1)
P 		202.1
(-3)
P 		276
(-0.4)
P 		168
B 250.7
(1.1)
P 		201.6
(-3)
P 		258.7
(1.8)
P 		269.7
(2.7)
P 		236.4
(-0.1)
P 		273.1
(3)
P 		72
C 221
(-1.9)
P 		234.9
(-1.6)
P 		427.8
(3)
P 		308.2
(0.2)
P 		174.2
(-3)
P 		328.2
(0.6)
P 		254
avr 280.4
(0.5) 		251.8
(-0.8) 		333.9
(3) 		268.3
(-0) 		204.2
(-3) 		292.4
(1.1) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 96.6
(3)
P 		47
(-1.5)
P 		31
(-3)
M 		91.1
(2.5)
P 		66
B 55.3
(-1.7)
P 		51.8
(-1.9)
P 		30.9
(-3)
P 		140.1
(3)
P 		109
C 74.4
(3)
P 		67.9
(0.5)
P 		58.5
(-3)
P 		64.7
(-0.7)
P 		16
avr 75.4
(0.6) 		55.6
(-1.4) 		40.1
(-3) 		98.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 68.1
(-1.9)
P 		113.4
(3)
P 		68.6
(-1.8)
P 		57.6
(-3)
P 		61
(-2.6)
P 		67.2
(-2)
P 		56
B 87.2
(0.8)
P 		67.1
(-2.3)
P 		62.8
(-3)
P 		71.4
(-1.7)
P 		96.1
(2.1)
P 		101.8
(3)
P 		39
C 81.9
(-0.1)
P 		71.7
(-1.3)
P 		108.9
(2.9)
P 		62
(-2.4)
P 		56.4
(-3)
P 		109.9
(3)
P 		54
avr 79.1
(0.2) 		84.1
(1.2) 		80.1
(0.4) 		63.7
(-3) 		71.2
(-1.5) 		93
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178549_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2291
Sequence Type Exemplar sequence
Representative Public ID K07A1.3 NCBI
Target Description K07A1.3 /REP_DB=WormBase Gene ID /WP=CE11844 /TR=P90910 /GB=CAB03165.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060142 NCBI Caenorhabditis elegans K07A1.3 (K07A1.3) mRNA, complete cds. 11/11 None
SNAP00000041845 ENSEMBL cdna:SNAP chromosome:CEL140:I:9594038:9596201:-1 10/11 None
GENEFINDER00000041875 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9595328:9596201:-1 10/11 None
K07A1.3 ENSEMBL cdna:known chromosome:CEL140:I:9595651:9596148:-1 gene:K07A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9595581-9595972(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07A1.3
Entrez Gene 172795 Entrez gene
SwissProt P90910 EMBL-EBI
WormBase CE11844 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03165 Hypothetical protein K07A1.3 [Caenorhabditis elegans] ref|NP_492543.1| K07A1.3 [Caenorhabditis elegans] 3.0E-62
blast CAB03165 Hypothetical protein K07A1.3 [Caenorhabditis elegans] ref|NP_492543.1| K07A1.3 [Caenorhabditis elegans] 2.0E-54
blast CAB03165 Hypothetical protein K07A1.3 [Caenorhabditis elegans] ref|NP_492543.1| K07A1.3 [Caenorhabditis elegans] 3.0E-54
blast XP_624368 PREDICTED: similar to ENSANGP00000023520, partial [Apis mellifera] 2.0E-21
blast CAE60170 Hypothetical protein CBG03724 [Caenorhabditis briggsae] 4.0E-21
blast CAE60170 Hypothetical protein CBG03724 [Caenorhabditis briggsae] 6.0E-20
blast CAE60170 Hypothetical protein CBG03724 [Caenorhabditis briggsae] 8.0E-20
blast XP_624368 PREDICTED: similar to ENSANGP00000023520, partial [Apis mellifera] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR005074 EMBL-EBI Peptidase C39, bacteriocin processing 2.2E-4
Sequence
Target Sequence 
>C. ELEGANS:178549_AT
agtattcaggtgcggccttgtagccatatctatgtgcttggaacatttcgggatcaaaac
taatcccgagacaatactcgaaaaagccaaagagatgggtttcacgaaacaaggagaaat
gtactctgctgaatcactggcttctctcacaaatgaattcctgccaaattcttccaaaat
tcgaaaaatgccttccccaaaagaatttactcaatccatttgtgatgggaaacagatgtt
gattgcatacgattgtggtcccaattatcagcccgtttatgtgagaggacactctgctca
ttggttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATTCAGGTGCGGCCTTGTAGCC 505 61 18 Antisense
GGCCTTGTAGCCATATCTATGTGCT 329 543 31 Antisense
TGTGCTTGGAACATTTCGGGATCAA 221 557 50 Antisense
CAAAACTAATCCCGAGACAATACTC 126 189 72 Antisense
TGTACTCTGCTGAATCACTGGCTTC 468 559 137 Antisense
ATCACTGGCTTCTCTCACAAATGAA 20 29 150 Antisense
ATGAATTCCTGCCAAATTCTTCCAA 573 43 170 Antisense
TGCCTTCCCCAAAAGAATTTACTCA 76 585 206 Antisense
GTTGATTGCATACGATTGTGGTCCC 657 437 255 Antisense
TCCCAATTATCAGCCCGTTTATGTG 308 597 276 Antisense
AGAGGACACTCTGCTCATTGGTTGC 446 67 301 Antisense
Sequence Source Affymetrix Proprietary Database