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[178548_at]

Description R05H5.7 /REP_DB=WormBase Gene ID /WP=CE02294 /TR=Q21766 /GB=CAA88730.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 97.4
(-2.1)
A 		80.8
(-3)
A 		83
(-2.9)
A 		197
(3)
A 		116
B 117.9
(-0.8)
A 		126.1
(0.1)
A 		95.7
(-3)
A 		155.2
(3)
P 		60
C 111.3
(-2.8)
A 		160.6
(-0.1)
A 		108.4
(-3)
A 		216.8
(3)
P 		108
avr 108.9
(-2.2) 		122.5
(-1.3) 		95.7
(-3) 		189.7
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 146.4
(0.7)
A 		144.7
(0.4)
P 		132.1
(-1.9)
P 		128.4
(-2.5)
A 		159.1
(3)
P 		125.7
(-3)
A 		33
B 91.2
(-0.4)
A 		129
(1.9)
P 		47
(-3)
A 		148
(3)
M 		126.2
(1.7)
M 		85.7
(-0.7)
A 		101
C 79.6
(-2.2)
A 		106.2
(-0.9)
A 		63.7
(-3)
A 		185.9
(3)
A 		146.8
(1.1)
P 		107.9
(-0.8)
A 		122
avr 105.7
(-1) 		126.6
(0.7) 		80.9
(-3) 		154.1
(3) 		144
(2.2) 		106.4
(-0.9) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 35.5
(3)
A 		17.5
(-3)
A 		21.7
(-1.6)
A 		28.8
(0.8)
A 		18
B 37.6
(3)
A 		31.2
(0.5)
A 		22.2
(-3)
A 		33.1
(1.2)
P 		15
C 36.8
(-2.9)
A 		46.2
(3)
A 		37.8
(-2.3)
A 		36.6
(-3)
P 		10
avr 36.6
(3) 		31.6
(-0.2) 		27.2
(-3) 		32.8
(0.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 27
(-3)
A 		51.5
(3)
P 		28.8
(-2.6)
P 		32.6
(-1.6)
A 		48
(2.1)
P 		30.6
(-2.1)
A 		25
B 31.7
(0.1)
A 		42.9
(1.7)
P 		11.4
(-3)
A 		39.2
(1.2)
M 		51.3
(3)
M 		32
(0.1)
A 		40
C 29.5
(-0.5)
A 		32.4
(0.1)
A 		16.2
(-3)
A 		37.4
(1.1)
A 		47.5
(3)
P 		36.1
(0.8)
A 		31
avr 29.4
(-0.9) 		42.3
(1.7) 		18.8
(-3) 		36.4
(0.5) 		48.9
(3) 		32.9
(-0.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178548_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4000
Sequence Type Exemplar sequence
Representative Public ID R05H5.7 NCBI
Target Description R05H5.7 /REP_DB=WormBase Gene ID /WP=CE02294 /TR=Q21766 /GB=CAA88730.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063797 NCBI Caenorhabditis elegans R05H5.7 (R05H5.7) mRNA, complete cds. 11/11 None
SNAP00000021966 ENSEMBL cdna:SNAP chromosome:CEL140:II:10192440:10193331:1 11/11 None
GENEFINDER00000021972 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10192440:10197241:1 11/11 None
R05H5.7 ENSEMBL cdna:known chromosome:CEL140:II:10192440:10193331:1 gene:R05H5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10192436-10193328(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05H5.7
Entrez Gene 187629 Entrez gene
SwissProt Q21766 EMBL-EBI
WormBase CE02294 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88729 Hypothetical protein R05H5.6 [Caenorhabditis elegans] ref|NP_496199.1| Serpentine Receptor, class B (beta) family member (srb-6) [Caenorhabditis elegans] sp|P54141|SRB6_CAEEL Serpentine receptor class beta-6 (Protein srb-6) prf||2123261U chemosensory receptor 0.0
blast CAA88730 Hypothetical protein R05H5.7 [Caenorhabditis elegans] ref|NP_496198.1| R05H5.7 [Caenorhabditis elegans] 1.0E-115
blast CAA88730 Hypothetical protein R05H5.7 [Caenorhabditis elegans] ref|NP_496198.1| R05H5.7 [Caenorhabditis elegans] 1.0E-112
blast CAE57856 Hypothetical protein CBG00894 [Caenorhabditis briggsae] 5.0E-78
blast CAE57856 Hypothetical protein CBG00894 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.3E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021972 7 241-263,276-298,325-347,360-382,404-426,455-477,497-519
Sequence
Target Sequence 
>C. ELEGANS:178548_AT
gcctgacaatcctcgacatagtactttgcatggctccaatgcctcatattgattggtgtc
tttattggagatatttcaataaggatcaatttaggcccgaatgtaacggagtgtaccgtc
tgaggtttgcgaaacataaagctcacgatcatcgaccccgagtaacccctcaactatcaa
gtgtcccatggacaccagcagcaccagttccaagattcaactcttttgtcaatacgaact
ctataatcataagcaatgaaaatggatttggagagtgtcgaccgcatcatacaaattgcc
agcaatccggacaatgttcatcaaatcaattatgcatagacagtaatggatattgttgtg
gcaataaaaaaataataaccgaatgcccatcaccatcctctcttgttgctcattgtgcat
tccgtcgtcgtcaagtgaattggtgtgaatcagattccgaatgtgcaccacacttggctc
cacgtcagaacagatttttctttaacgacgccacagttctggacagcattcagaagtctc
catcactttgctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTGACAATCCTCGACATAGTACT 371 283 35 Antisense
TACTTTGCATGGCTCCAATGCCTCA 330 645 56 Antisense
GGAGTGTACCGTCTGAGGTTTGCGA 607 515 142 Antisense
GTAACCCCTCAACTATCAAGTGTCC 236 461 196 Antisense
TTGGAGAGTGTCGACCGCATCATAC 131 709 302 Antisense
GCCAGCAATCCGGACAATGTTCATC 165 279 332 Antisense
TGCATTCCGTCGTCGTCAAGTGAAT 271 579 450 Antisense
TCCGAATGTGCACCACACTTGGCTC 625 595 490 Antisense
AGATTTTTCTTTAACGACGCCACAG 65 65 526 Antisense
GACGCCACAGTTCTGGACAGCATTC 637 381 541 Antisense
TCAGAAGTCTCCATCACTTTGCTGC 633 623 564 Antisense
Sequence Source Affymetrix Proprietary Database