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[178547_at]

Description R148.7 /REP_DB=WormBase Gene ID /WP=CE12860 /TR=O17270 /GB=AAB71041.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 11.8
(-3)
A 		385.7
(2.3)
P 		436.3
(3)
P 		14.3
(-3)
A 		425
B 14.3
(-3)
A 		359
(3)
P 		334.9
(2.6)
P 		12.2
(-3)
A 		347
C 6.7
(-3)
A 		382.4
(2.4)
P 		420.9
(3)
P 		52.9
(-2.3)
A 		414
avr 10.9
(-3) 		375.7
(2.7) 		397.4
(3) 		26.5
(-2.8) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 879
1 2 3 4 5 6 range
A 132.3
(-3)
A 		248.3
(-2)
P 		389.7
(-0.8)
P 		842.1
(3)
P 		546.5
(0.5)
P 		269.8
(-1.8)
P 		710
B 154.7
(-3)
A 		265.7
(-2.1)
P 		356.7
(-1.3)
P 		867.8
(3)
P 		635.5
(1)
P 		211.2
(-2.5)
P 		713
C 154.4
(-3)
A 		235.2
(-2.4)
P 		419.7
(-1.1)
P 		1010.8
(3)
P 		594.4
(0.1)
P 		183.1
(-2.8)
P 		856
avr 147.1
(-3) 		249.7
(-2.2) 		388.7
(-1.1) 		906.9
(3) 		592.1
(0.5) 		221.4
(-2.4) 		760
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 4.3
(-2.9)
A 		83.7
(1.4)
P 		114.1
(3)
P 		2.1
(-3)
A 		112
B 4.6
(-2.9)
A 		88.7
(3)
P 		77.6
(2.2)
P 		2.6
(-3)
A 		86
C 2.2
(-3)
A 		110
(1.5)
P 		146.7
(3)
P 		8.9
(-2.7)
A 		145
avr 3.7
(-3) 		94.1
(2) 		112.8
(3) 		4.5
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 24.4
(-3)
A 		88.3
(-1)
P 		84.9
(-1.1)
P 		213.6
(3)
P 		164.9
(1.5)
P 		65.7
(-1.7)
P 		189
B 53.8
(-3)
A 		88.4
(-2)
P 		86.6
(-2)
P 		229.8
(2.2)
P 		258.2
(3)
P 		78.8
(-2.3)
P 		204
C 57.2
(-3)
A 		71.8
(-2.4)
P 		106.8
(-1)
P 		203.3
(3)
P 		192.3
(2.5)
P 		61.3
(-2.8)
P 		146
avr 45.1
(-3) 		82.8
(-1.7) 		92.8
(-1.3) 		215.6
(3) 		205.1
(2.6) 		68.6
(-2.2) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6381
Sequence Type Exemplar sequence
Representative Public ID R148.7 NCBI
Target Description R148.7 /REP_DB=WormBase Gene ID /WP=CE12860 /TR=O17270 /GB=AAB71041.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065269 NCBI Caenorhabditis elegans R148.7 (R148.7) mRNA, complete cds. 11/11 None
SNAP00000030367 ENSEMBL cdna:SNAP chromosome:CEL140:III:3195577:3197565:-1 11/11 None
GENEFINDER00000030374 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3195577:3199785:-1 11/11 None
R148.7 ENSEMBL cdna:known chromosome:CEL140:III:3195577:3197357:-1 gene:R148.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3195576-3197357(-) 92.59 100.0
Public Domain and Genome References
Gene Title
Ensembl R148.7
Entrez Gene 175425 Entrez gene
SwissProt O17270 EMBL-EBI
WormBase CE12860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71041 Hypothetical protein R148.7 [Caenorhabditis elegans] ref|NP_497670.1| R148.7 [Caenorhabditis elegans] 1.0E-112
blast AAB71041 Hypothetical protein R148.7 [Caenorhabditis elegans] ref|NP_497670.1| R148.7 [Caenorhabditis elegans] 5.0E-98
blast AAB71041 Hypothetical protein R148.7 [Caenorhabditis elegans] ref|NP_497670.1| R148.7 [Caenorhabditis elegans] 3.0E-92
blast AAB71040 He1 homologue protein 1 [Caenorhabditis elegans] ref|NP_497671.2| HE1 homologue family member (heh-1) [Caenorhabditis elegans] sp|O17271|HEH1_CAEEL Putative protein heh-1 precursor 2.0E-71
blast CAE72967 Hypothetical protein CBG20304 [Caenorhabditis briggsae] 1.0E-58
blast CAE72966 Hypothetical protein CBG20303 [Caenorhabditis briggsae] 1.0E-19
blast CAE72966 Hypothetical protein CBG20303 [Caenorhabditis briggsae] 3.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR003172 EMBL-EBI E1 protein and Def2/Der2 allergen 9.8E-33
Sequence
Target Sequence 
>C. ELEGANS:178547_AT
aaagacgtgccactaaagccgctgagctcaattctgctgaggcgaactccgagataagag
atgaggatgagactgattgtgagatgccaagcgtcaaacccaaccaatctccatcgaaaa
tccctgttctccaaaaaggctatcaattttcgaacgaggagaagccttctctgatccttt
ccggctcttctccatcgaaaattccgcgtccaaaagctcaattggtctacttgaatgtga
ataacgatattatctctgatgatcccaccagtacttatgagccaactagcttcactccaa
cttctggctccttcacccacacttcaactagcggtgaaaatcttcatacaatgccaaatg
agttgcagcctttgccactgtgtgatatttcatcggaatacgagtcgaaaaccgagccgg
acactggaaaacaccaggttgacgtgattgccgaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGACGTGCCACTAAAGCCGCTGA 111 123 257 Antisense
TAAAGCCGCTGAGCTCAATTCTGCT 39 641 270 Antisense
AATTCTGCTGAGGCGAACTCCGAGA 155 177 286 Antisense
TGAGATGCCAAGCGTCAAACCCAAC 293 567 336 Antisense
CATCGAAAATCCCTGTTCTCCAAAA 607 211 368 Antisense
GAAAATTCCGCGTCCAAAAGCTCAA 505 351 453 Antisense
TGATCCCACCAGTACTTATGAGCCA 616 563 516 Antisense
TATGAGCCAACTAGCTTCACTCCAA 224 655 532 Antisense
TTCACCCACACTTCAACTAGCGGTG 95 687 568 Antisense
GCAGCCTTTGCCACTGTGTGATATT 697 313 621 Antisense
ACCAGGTTGACGTGATTGCCGAGGC 238 87 689 Antisense
Sequence Source Affymetrix Proprietary Database