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[178546_at]

Description F17A2.4 /REP_DB=WormBase Gene ID /WP=CE03214 /TR=Q19502 /GB=CAA92153.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 36.9
(3)
A 		31.2
(1.7)
A 		10.7
(-3)
A 		35.9
(2.8)
A 		26
B 55.7
(3)
A 		45.2
(1)
A 		29.4
(-1.9)
A 		23.7
(-3)
A 		32
C 40.4
(3)
A 		4.2
(-3)
A 		38.7
(2.7)
A 		33.7
(1.9)
A 		36
avr 44.3
(3) 		26.9
(-2.8) 		26.3
(-3) 		31.1
(-1.4) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 11.7
(-2)
A 		51.4
(3)
A 		6.4
(-2.6)
A 		8.8
(-2.3)
A 		3.7
(-3)
A 		3.4
(-3)
A 		48
B 10.4
(-0.5)
A 		22.5
(3)
A 		6.8
(-1.5)
A 		10.1
(-0.5)
A 		10.4
(-0.5)
A 		1.5
(-3)
A 		21
C 29.3
(2.3)
A 		31.8
(2.8)
A 		4.3
(-2.5)
A 		33.1
(3)
A 		28
(2)
A 		1.9
(-3)
A 		31
avr 17.1
(-0.3) 		35.2
(3) 		5.8
(-2.4) 		17.3
(-0.3) 		14
(-0.9) 		2.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.4
(3)
A 		6.8
(-0.7)
A 		2.8
(-3)
A 		5.3
(-1.6)
A 		11
B 17.8
(3)
A 		11.2
(-0.1)
A 		6.8
(-2.2)
A 		5
(-3)
A 		13
C 13.4
(3)
A 		1.2
(-3)
A 		13.5
(3)
A 		5.7
(-0.8)
A 		12
avr 14.9
(3) 		6.4
(-2.3) 		7.7
(-1.5) 		5.3
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.2
(-2.5)
A 		18.3
(3)
A 		1.4
(-2.8)
A 		2.2
(-2.5)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		18
B 3.6
(-0.4)
A 		7.5
(3)
A 		1.6
(-2.1)
A 		2.7
(-1.2)
A 		4.2
(0.1)
A 		0.6
(-3)
A 		7
C 10.9
(3)
A 		9.7
(2.3)
A 		1.1
(-2.7)
A 		6.7
(0.6)
A 		9.1
(2)
A 		0.6
(-3)
A 		10
avr 5.6
(-0.4) 		11.8
(3) 		1.4
(-2.6) 		3.9
(-1.3) 		4.8
(-0.8) 		0.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17202
Sequence Type Exemplar sequence
Representative Public ID F17A2.4 NCBI
Target Description F17A2.4 /REP_DB=WormBase Gene ID /WP=CE03214 /TR=Q19502 /GB=CAA92153.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077657 NCBI Caenorhabditis elegans F17A2.4 (F17A2.4) mRNA, complete cds. 11/11 None
F17A2.4 ENSEMBL cdna:known chromosome:CEL140:X:12310733:12312651:1 gene:F17A2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014140 8/11 Cross Hyb Matching Probes None
SNAP00000014127 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12310732-12312651(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17A2.4
Entrez Gene 184601 Entrez gene
SwissProt Q19502 EMBL-EBI
WormBase CE03214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92153 Hypothetical protein F17A2.4 [Caenorhabditis elegans] ref|NP_510058.1| F17A2.4 [Caenorhabditis elegans] 6.0E-85
Sequence
Target Sequence 
>C. ELEGANS:178546_AT
ggctgatccatgtcatgtcatgtccaagctccaagccatgtcatgtcatgtgctccaagc
tgaacaaggctgtgagaaaaggtgcagtcacgagagcatgaaacttcatcttactggaat
accaacactgaatgagaaatatgcaacaaagctggaaaagttctatctcgtcatcaacta
tcacccagctaacattgcaagggcatttaaatactcgtcgtttgtagtctatctgaagcg
tgggtttcacccacaaacgggattttcgttgaacggttactgcgttggaccattcctgaa
acatggatgtgactgcacacaagtaaagccggttaatattatcgctttgatttctcttaa
cacggcaatcttcaaagaagctgtttcgggttccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGATCCATGTCATGTCATGTCC 632 539 15 Antisense
AGCTCCAAGCCATGTCATGTCATGT 405 81 41 Antisense
TCATGTCATGTGCTCCAAGCTGAAC 191 623 55 Antisense
TTCTATCTCGTCATCAACTATCACC 565 689 175 Antisense
AACTATCACCCAGCTAACATTGCAA 595 139 190 Antisense
AATACTCGTCGTTTGTAGTCTATCT 108 173 224 Antisense
CTATCTGAAGCGTGGGTTTCACCCA 406 221 243 Antisense
GTTACTGCGTTGGACCATTCCTGAA 209 447 290 Antisense
TATCGCTTTGATTTCTCTTAACACG 298 659 354 Antisense
TTCTCTTAACACGGCAATCTTCAAA 594 691 366 Antisense
CAAAGAAGCTGTTTCGGGTTCCGAT 255 189 387 Antisense
Sequence Source Affymetrix Proprietary Database