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[178545_at]

Description F11A1.2 /REP_DB=WormBase Gene ID /WP=CE03180 /TR=Q19332 /GB=CAA90718.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 37.4
(-0.4)
A 		30.5
(-2.7)
A 		29.6
(-3)
A 		47.4
(3)
A 		18
B 34.2
(0.7)
A 		52.1
(3)
A 		4.3
(-3)
A 		52.4
(3)
A 		48
C 20.9
(-3)
A 		52.7
(0.2)
A 		24.4
(-2.7)
A 		81.2
(3)
P 		60
avr 30.8
(-1.3) 		45.1
(0.8) 		19.4
(-3) 		60.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 19.7
(-0.8)
A 		6.7
(-2.7)
A 		44.5
(2.9)
A 		45.3
(3)
A 		27.3
(0.3)
A 		4.7
(-3)
A 		41
B 6.1
(-3)
A 		36.3
(3)
A 		15.1
(-1.2)
A 		21.8
(0.1)
A 		19.5
(-0.3)
A 		15
(-1.2)
A 		30
C 3
(-3)
A 		35.8
(2.7)
A 		4.3
(-2.8)
A 		37.7
(3)
A 		24.9
(0.8)
A 		14
(-1.1)
A 		35
avr 9.6
(-3) 		26.3
(1) 		21.3
(-0.2) 		34.9
(3) 		23.9
(0.4) 		11.2
(-2.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 13.6
(3)
A 		6.6
(-3)
A 		7.7
(-2.1)
A 		6.9
(-2.7)
A 		7
B 10.9
(2)
A 		12.9
(3)
A 		1
(-3)
A 		11.2
(2.1)
A 		12
C 6.9
(-3)
A 		15.2
(3)
A 		8.5
(-1.8)
A 		13.7
(1.9)
P 		8
avr 10.5
(1.9) 		11.6
(3) 		5.7
(-3) 		10.6
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.6
(-1.6)
A 		2.4
(-2.3)
A 		9.7
(2)
A 		11.5
(3)
A 		8.2
(1.1)
A 		1.2
(-3)
A 		10
B 2.1
(-3)
A 		12.1
(3)
A 		3.7
(-2)
A 		5.8
(-0.8)
A 		7.9
(0.5)
A 		5.6
(-0.9)
A 		10
C 1.1
(-3)
A 		10.9
(3)
A 		1.1
(-3)
A 		7.6
(1)
A 		8.1
(1.3)
A 		4.7
(-0.8)
A 		10
avr 2.3
(-3) 		8.5
(3) 		4.8
(-0.6) 		8.3
(2.8) 		8.1
(2.6) 		3.8
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16458
Sequence Type Exemplar sequence
Representative Public ID F11A1.2 NCBI
Target Description F11A1.2 /REP_DB=WormBase Gene ID /WP=CE03180 /TR=Q19332 /GB=CAA90718.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077382 NCBI Caenorhabditis elegans F11A1.2 (F11A1.2) mRNA, complete cds. 11/11 None
F11A1.2 ENSEMBL cdna:known chromosome:CEL140:X:10656523:10659502:-1 gene:F11A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10656522-10659502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A1.2
Entrez Gene 184325 Entrez gene
SwissProt Q19332 EMBL-EBI
WormBase CE03180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90718 Hypothetical protein F11A1.2 [Caenorhabditis elegans] ref|NP_509783.1| F11A1.2 [Caenorhabditis elegans] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:178545_AT
ggaacgtcgtctgtaacattctcaatcgacgtgtgtgtgtgtgcttgaagccgacgttgt
cgttcgctgctcgcgttcaaaacgagttttgtttttctcatatcttcaggcgcgacgatg
ccgagcacacgcacacgctacattcaacattcataaagagaaaagaagtgctgagcaacc
attccaacaacacgcctcgacgggccaccgggggctataatgggtggcggtggtgcccta
ctttttcaatcgttcgggtggttgctactttaaaatcttcagaggttagagtgaatgaga
agaaaagactcgcactccgattggccggtgtcagctctgaactgcagacagagttccgcc
cagttttggccagcatcgtctccatggtcgggactgctatttcgcatctactctctcttt
ctaatcttgttcaattcactttgcgggcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGTCGTCTGTAACATTCTCAA 640 527 125 Antisense
TTGAAGCCGACGTTGTCGTTCGCTG 250 703 169 Antisense
TTGTTTTTCTCATATCTTCAGGCGC 642 705 213 Antisense
TCTTCAGGCGCGACGATGCCGAGCA 233 617 227 Antisense
CACACGCTACATTCAACATTCATAA 578 195 256 Antisense
TGCTGAGCAACCATTCCAACAACAC 356 583 293 Antisense
ATAATGGGTGGCGGTGGTGCCCTAC 151 25 341 Antisense
TGCCCTACTTTTTCAATCGTTCGGG 653 571 358 Antisense
AGAAAAGACTCGCACTCCGATTGGC 397 71 425 Antisense
CATGGTCGGGACTGCTATTTCGCAT 396 207 507 Antisense
TGTTCAATTCACTTTGCGGGCAGCA 41 563 552 Antisense
Sequence Source Affymetrix Proprietary Database