[Home] | [Total List]

[178544_at]

Description T06D8.9 /REP_DB=WormBase Gene ID /WP=CE02330 /TR=Q22254 /GB=CAA88972.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 78      6grp_total > 98      4grp_total > 33      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 620
1 2 3 4 range
A 1303.5
(-3)
P 		1923.3
(3)
P 		1552.8
(-0.6)
P 		1912.4
(2.9)
P 		620
B 1372.3
(-3)
P 		1561.6
(-0.1)
P 		1763.9
(3)
P 		1624.4
(0.9)
P 		392
C 1386.5
(-3)
P 		1462.1
(-1.2)
P 		1538.6
(0.6)
P 		1642.5
(3)
P 		256
avr 1354.1
(-3) 		1649
(1.8) 		1618.4
(1.3) 		1726.4
(3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1088
1 2 3 4 5 6 range
A 1398
(-2.3)
P 		1392.9
(-2.3)
P 		1306.1
(-3)
P 		1461.4
(-1.8)
P 		1902.3
(1.8)
P 		2056.4
(3)
P 		750
B 1465.4
(-0.6)
P 		1344.4
(-1.5)
P 		1148.3
(-3)
P 		1511.8
(-0.3)
P 		1951.7
(3)
P 		1883
(2.5)
P 		803
C 1513.6
(0.7)
P 		968
(-3)
P 		1554.3
(0.9)
P 		1425.5
(0.1)
P 		1841.7
(2.9)
P 		1860.9
(3)
P 		893
avr 1459
(-1.1) 		1235.1
(-3) 		1336.2
(-2.1) 		1466.2
(-1) 		1898.6
(2.7) 		1933.4
(3) 		698
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 474.6
(3)
P 		417.5
(1.2)
P 		405.9
(0.9)
P 		279.9
(-3)
P 		195
B 437.6
(3)
P 		385.7
(-0.4)
P 		408.7
(1.1)
P 		346.2
(-3)
P 		91
C 459
(1.2)
P 		420.4
(0.3)
P 		536.2
(3)
P 		276.9
(-3)
P 		259
avr 457.1
(3) 		407.9
(1.1) 		450.3
(2.7) 		301
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 535
1 2 3 4 5 6 range
A 257.7
(-3)
P 		495.4
(1.5)
P 		284.4
(-2.5)
P 		370.7
(-0.9)
P 		574
(3)
P 		500.7
(1.6)
P 		316
B 509.9
(-0.3)
P 		447.5
(-1)
P 		278.9
(-3)
P 		400.4
(-1.6)
P 		793
(3)
P 		702.2
(1.9)
P 		514
C 561
(1.9)
P 		295.4
(-2.8)
P 		395.6
(-1.1)
P 		286.7
(-3)
P 		595.9
(2.5)
P 		623
(3)
P 		336
avr 442.9
(-0.8) 		412.8
(-1.3) 		319.6
(-3) 		352.6
(-2.4) 		654.3
(3) 		608.6
(2.2) 		335
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3525
Sequence Type Exemplar sequence
Representative Public ID T06D8.9 NCBI
Target Description T06D8.9 /REP_DB=WormBase Gene ID /WP=CE02330 /TR=Q22254 /GB=CAA88972.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064005 NCBI Caenorhabditis elegans T06D8.9 (T06D8.9) mRNA, complete cds. 11/11 None
SNAP00000001115 ENSEMBL cdna:SNAP chromosome:CEL140:II:11239624:11240729:1 11/11 None
GENEFINDER00000001118 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11239624:11240729:1 11/11 None
T06D8.9 ENSEMBL cdna:known chromosome:CEL140:II:11239312:11240871:1 gene:T06D8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11239308-11240726(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D8.9
Entrez Gene 174716 Entrez gene
SwissProt Q22254 EMBL-EBI
WormBase CE38219 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585218_AT similar to transmembrane protein 66 cfa
CANINE_2:CFA.11269.1.A1_AT similar to transmembrane protein 66 cfa
CANINE_2:CFA.21003.1.S1_S_AT similar to transmembrane protein 66 cfa
CANINE_2:CFAAFFX.10789.1.S1_S_AT similar to transmembrane protein 66 cfa
CHICKEN:GGA.6526.1.S1_S_AT transmembrane protein 66 gga
HG-U95AV2:36975_AT transmembrane protein 66 hs
HG-U133_PLUS_2:200847_S_AT transmembrane protein 66 hs
HG-U133A:200847_S_AT transmembrane protein 66 hs
HG-FOCUS:200847_S_AT transmembrane protein 66 hs
HG-U133A_2:200847_S_AT transmembrane protein 66 hs
HU35KSUBC:RC_AA400915_AT transmembrane protein 66 hs
HU35KSUBD:RC_AA430028_AT transmembrane protein 66 hs
U133_X3P:G7706384_3P_A_AT transmembrane protein 66 hs
HG-U95B:45476_AT transmembrane protein 66 hs
HG-U95B:52333_F_AT transmembrane protein 66 hs
HG-U95C:59710_F_AT transmembrane protein 66 hs
HG-U95C:59715_F_AT transmembrane protein 66 hs
MU11KSUBB:W11020_G_AT transmembrane protein 66 mm
MU11KSUBB:W11020_AT transmembrane protein 66 mm
MG-U74AV2:95146_AT transmembrane protein 66 mm
MG-U74BV2:164995_AT transmembrane protein 66 mm
MOE430A:1424039_AT transmembrane protein 66 mm
MOUSE430A_2:1424039_AT transmembrane protein 66 mm
MOUSE430_2:1424039_AT transmembrane protein 66 mm
MU19KSUBC:TC40179_AT Transmembrane protein 66 (Tmem66), mRNA mm
MU19KSUBC:TC41179_AT Transmembrane protein 66 (Tmem66), mRNA mm
RAE230A:1398879_AT similar to hypothetical protein MGC8721 rn
RAT230_2:1398879_AT similar to hypothetical protein MGC8721 rn
Protein Similarities
Method ID Description E-Value
blast CAA88972 Hypothetical protein T06D8.9 [Caenorhabditis elegans] ref|NP_496406.2| T06D8.9 [Caenorhabditis elegans] 1.0E-108
blast CAE59545 Hypothetical protein CBG02941 [Caenorhabditis briggsae] 1.0E-93
blast XP_789868 PREDICTED: similar to putative membrane protein of fungal and metazoan origin (2L531) [Strongylocentrotus purpuratus] 2.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR009567 EMBL-EBI Protein of unknown function DUF1183 1.1E-42
Pfam IPR009567 EMBL-EBI Protein of unknown function DUF1183 1.1E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496406.2 3 5-22,152-169,248-270
T06D8.9 3 7-29,159-176,255-277
SNAP00000001115 3 5-22,152-169,248-270
GENEFINDER00000001118 3 5-22,152-169,248-270
Sequence
Target Sequence 
>C. ELEGANS:178544_AT
gtttctcgaaagtcatcccaggatcgatgggatcagttcgccacgttcgtcgtcgtcgcc
ttcatcgcctacattatctacgcgatgtggactaacagaaatcagaacccagaaagctct
ggctacacttctggtggatcaggaggtcctggaggcccaggatccggcggaggaggtggt
ggtccaggtggttatccaagtgctcctccaccatatgacgactactccaagccaccgcca
tatgggttccgtggtgactcgcaatctggaggtggatgtcagggaagttctagcggagga
gcaagtggcagtggcgccaacaatggtggatcgttttggactggagcaagtctaggagcc
attggaggatacctggcatccagcttcctcaacaataacaatgcctacgcccgtccacga
tacaacagaggattcttccaagacacaggcttctcaagttccgattcctggtcatcacct
tctacttcatcaatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTCGAAAGTCATCCCAGGATC 159 451 451 Antisense
GATCGATGGGATCAGTTCGCCACGT 377 417 472 Antisense
CCTTCATCGCCTACATTATCTACGC 639 269 509 Antisense
CTCTGGCTACACTTCTGGTGGATCA 42 233 567 Antisense
GGTGGTGGTCCAGGTGGTTATCCAA 41 497 625 Antisense
CACCATATGACGACTACTCCAAGCC 456 201 659 Antisense
CCACCGCCATATGGGTTCCGTGGTG 454 273 682 Antisense
TTCCGTGGTGACTCGCAATCTGGAG 310 697 697 Antisense
AACAATAACAATGCCTACGCCCGTC 604 133 841 Antisense
TTCTCAAGTTCCGATTCCTGGTCAT 157 691 901 Antisense
TCATCACCTTCTACTTCATCAATGC 116 621 922 Antisense
Sequence Source Affymetrix Proprietary Database