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[178542_at] G-protein coupled receptor, srg family

Description F31E9.2 /REP_DB=WormBase Gene ID /WP=CE15936 /TR=O45426 /GB=CAB07199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 26      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.8
(-2.8)
A 		17.2
(-1.1)
A 		5.6
(-3)
A 		42.4
(3)
A 		37
B 2.5
(-3)
A 		12.9
(0)
A 		23.3
(3)
A 		3.7
(-2.7)
A 		21
C 17.1
(3)
A 		12.9
(1.1)
A 		4.1
(-3)
A 		9.7
(-0.4)
A 		13
avr 8.8
(-3) 		14.3
(0.4) 		11
(-1.7) 		18.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 8.3
(-1.7)
A 		24.9
(2.9)
A 		25.2
(3)
A 		7.1
(-2.1)
A 		3.8
(-3)
A 		6.9
(-2.1)
A 		21
B 19.4
(3)
A 		16.7
(1.6)
A 		14
(0.3)
A 		7.6
(-2.9)
A 		9.6
(-1.9)
A 		7.5
(-3)
A 		12
C 3.7
(-3)
A 		38.6
(3)
A 		4.2
(-2.9)
A 		23
(0.3)
A 		6.1
(-2.6)
A 		24.2
(0.5)
A 		35
avr 10.5
(-1.8) 		26.7
(3) 		14.5
(-0.6) 		12.6
(-1.2) 		6.5
(-3) 		12.9
(-1.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.5
(-1.7)
A 		3.7
(-0.2)
A 		1.5
(-3)
A 		6.2
(3)
A 		5
B 0.8
(-3)
A 		3.2
(0.1)
A 		5.4
(3)
A 		0.8
(-3)
A 		5
C 5.7
(3)
A 		3.7
(0.2)
A 		1.4
(-3)
A 		1.6
(-2.7)
A 		4
avr 3
(-1.3) 		3.5
(3) 		2.8
(-3) 		2.9
(-2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.5
(-2.7)
A 		8.9
(3)
A 		5.5
(0.4)
A 		1.8
(-2.5)
A 		1.1
(-3)
A 		1.7
(-2.5)
A 		8
B 6.8
(3)
A 		5.6
(1.5)
A 		3.4
(-1.3)
A 		2
(-3)
A 		3.9
(-0.6)
A 		2.8
(-2)
A 		5
C 1.4
(-2.8)
A 		11.8
(3)
A 		1.1
(-3)
A 		4.6
(-1)
A 		2
(-2.5)
A 		8.1
(0.9)
A 		11
avr 3.2
(-2.2) 		8.8
(3) 		3.3
(-2.1) 		2.8
(-2.5) 		2.3
(-3) 		4.2
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14226
Sequence Type Exemplar sequence
Representative Public ID F31E9.2 NCBI
Target Description F31E9.2 /REP_DB=WormBase Gene ID /WP=CE15936 /TR=O45426 /GB=CAB07199.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074986 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-44) (srg-44) mRNA, complete cds. 11/11 None
GENEFINDER00000027121 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17331374:17333049:1 10/11 None
F31E9.2 ENSEMBL cdna:known chromosome:CEL140:V:17331374:17333187:1 gene:F31E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17331373-17333187(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-44
Ensembl F31E9.2
Entrez Gene 185159 Entrez gene
SwissProt O45426 EMBL-EBI
WormBase CE33062 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07199 Hypothetical protein F31E9.2 [Caenorhabditis elegans] ref|NP_507387.2| Serpentine Receptor, class G (gamma) family member (srg-44) [Caenorhabditis elegans] 1.0E-128
blast CAB07199 Hypothetical protein F31E9.2 [Caenorhabditis elegans] ref|NP_507387.2| Serpentine Receptor, class G (gamma) family member (srg-44) [Caenorhabditis elegans] 1.0E-111
blast CAA98961 Hypothetical protein C51F7.2 [Caenorhabditis elegans] emb|CAA19423.1| Hypothetical protein C51F7.2 [Caenorhabditis elegans] ref|NP_506086.1| Serpentine Receptor, class G (gamma) family member (srg-45) [Caenorhabditis elegans] 1.0E-65
blast CAD60424 Hypothetical protein T19C4.9 [Caenorhabditis elegans] ref|NP_872229.1| Serpentine Receptor, class G (gamma) family member (srg-42) [Caenorhabditis elegans] 6.0E-63
blast CAA98961 Hypothetical protein C51F7.2 [Caenorhabditis elegans] emb|CAA19423.1| Hypothetical protein C51F7.2 [Caenorhabditis elegans] ref|NP_506086.1| Serpentine Receptor, class G (gamma) family member (srg-45) [Caenorhabditis elegans] 1.0E-58
blast CAD60424 Hypothetical protein T19C4.9 [Caenorhabditis elegans] ref|NP_872229.1| Serpentine Receptor, class G (gamma) family member (srg-42) [Caenorhabditis elegans] 3.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507387.2 6 7-29,44-66,129-151,177-199,216-238,248-270
F31E9.2 6 7-29,44-66,129-151,177-199,216-238,248-270
GENEFINDER00000027121 5 7-29,44-66,129-151,180-202,215-237
Sequence
Target Sequence 
>C. ELEGANS:178542_AT
ttccctgaatcgtctcacagtacttattaattataacgtttttgagccgatttggaagcg
attcacctggatattcattctattagctttttttgctccattcctgaaaacctacgtaat
gttgatatttaaagctgaaatatcttacattgaggctacagactcatttgagttagtctc
taatgatttgccattcagagagatcttcctatccgtgtttatgtttatgatgatcactat
gataatctccactctttgcaatttactcagttttcggtttcttcgaagtctgagcattca
acgaaaaaaggcagaagctaactttctaataatcatgtcaattacctgttttgttcaatt
tgttggtgcagtgctcactgggggtctattattccatgaatctgctgaattactcggaat
tattctagtggtcctgccatattcaagtgacctactctcacttctacagccatggctctt
ggtgtgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCTGAATCGTCTCACAGTACTT 31 699 336 Antisense
GCGATTCACCTGGATATTCATTCTA 221 291 393 Antisense
TATTAGCTTTTTTTGCTCCATTCCT 407 663 416 Antisense
TGCTCCATTCCTGAAAACCTACGTA 199 473 429 Antisense
ATCTTCCTATCCGTGTTTATGTTTA 291 31 538 Antisense
GATAATCTCCACTCTTTGCAATTTA 622 421 576 Antisense
CGGTTTCTTCGAAGTCTGAGCATTC 663 243 610 Antisense
AGTGCTCACTGGGGGTCTATTATTC 536 59 705 Antisense
TATTCTAGTGGTCCTGCCATATTCA 558 663 756 Antisense
GCCATATTCAAGTGACCTACTCTCA 449 281 771 Antisense
TACAGCCATGGCTCTTGGTGTGTTT 411 643 800 Antisense
Sequence Source Affymetrix Proprietary Database