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[178541_at]

Description ZK84.2 /REP_DB=WormBase Gene ID /WP=CE02925 /TR=Q23633 /GB=AAC48205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 53.8
(-3)
A 		86
(0.8)
P 		91.3
(1.4)
M 		105.1
(3)
A 		51
B 35.7
(-3)
A 		46.7
(-1.9)
A 		66.6
(0.2)
A 		93.7
(3)
A 		58
C 53.4
(0.6)
A 		64.9
(3)
A 		35.6
(-3)
A 		47.1
(-0.6)
A 		29
avr 47.6
(-3) 		65.9
(0.2) 		64.5
(-0.1) 		82
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 102
(-2.1)
A 		70
(-3)
A 		81.5
(-2.7)
A 		69.7
(-3)
A 		208.2
(0.8)
P 		287.3
(3)
P 		218
B 59.6
(-2.6)
A 		47.2
(-3)
A 		48.3
(-3)
A 		72.7
(-2.2)
P 		182.8
(1.5)
P 		228.9
(3)
P 		182
C 53.2
(-2.9)
A 		96.6
(-1.2)
A 		49.2
(-3)
A 		76.3
(-2)
A 		182.3
(1.9)
P 		211.6
(3)
P 		162
avr 71.6
(-2.6) 		71.3
(-2.6) 		59.7
(-3) 		72.9
(-2.6) 		191.1
(1.3) 		242.6
(3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 19.6
(-0)
A 		18.7
(-0.7)
P 		23.9
(3)
M 		15.4
(-3)
A 		9
B 11.4
(-3)
A 		11.5
(-2.9)
A 		15.4
(-0.2)
A 		20
(3)
A 		9
C 17.7
(2.4)
A 		18.7
(3)
A 		12.4
(-0.5)
A 		7.9
(-3)
A 		11
avr 16.2
(0.9) 		16.3
(1.1) 		17.2
(3) 		14.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 18.8
(-2.9)
A 		24.9
(-2.2)
A 		17.7
(-3)
A 		17.7
(-3)
A 		62.8
(2.2)
P 		70
(3)
P 		52
B 20.7
(-2.3)
A 		15.7
(-2.7)
A 		11.7
(-3)
A 		19.3
(-2.4)
P 		74.3
(2.1)
P 		85.3
(3)
P 		74
C 19.7
(-2.3)
A 		29.5
(-1.3)
A 		12.5
(-3)
A 		15.3
(-2.7)
A 		59
(1.8)
P 		70.8
(3)
P 		58
avr 19.7
(-2.4) 		23.4
(-2.1) 		14
(-3) 		17.4
(-2.7) 		65.4
(2) 		75.4
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5925
Sequence Type Exemplar sequence
Representative Public ID ZK84.2 NCBI
Target Description ZK84.2 /REP_DB=WormBase Gene ID /WP=CE02925 /TR=Q23633 /GB=AAC48205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062799 NCBI Caenorhabditis elegans ZK84.2 (ZK84.2) mRNA, complete cds. 11/11 None
SNAP00000003784 ENSEMBL cdna:SNAP chromosome:CEL140:II:6014463:6015773:1 11/11 None
GENEFINDER00000003791 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6014463:6015773:1 11/11 None
ZK84.2 ENSEMBL cdna:known chromosome:CEL140:II:6014389:6015773:1 gene:ZK84.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6014459-6015770(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK84.2
Entrez Gene 174007 Entrez gene
SwissProt Q23633 EMBL-EBI
WormBase CE02925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48205 Hypothetical protein ZK84.2 [Caenorhabditis elegans] ref|NP_495200.1| ZK84.2 [Caenorhabditis elegans] 1.0E-115
blast CAE59236 Hypothetical protein CBG02558 [Caenorhabditis briggsae] 1.0E-105
blast CAE61667 Hypothetical protein CBG05606 [Caenorhabditis briggsae] 2.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495200.1 4 7-29,71-90,97-119,139-161
ZK84.2 4 7-29,71-90,97-119,139-161
SNAP00000003784 4 7-29,71-90,97-119,139-161
GENEFINDER00000003791 4 7-29,71-90,97-119,139-161
Sequence
Target Sequence 
>C. ELEGANS:178541_AT
tttggcttttcgtgtccggaatgatatgtacttatgacgtggcatacacaatgaaccgtc
catacacgaatgatccggctagcccaaaggctaacttgttgttcggtggatgggctctct
attcatcagtggatcgtcactatttgacaacaaacgatgtattcacttgctcaacaggac
gtgtaatgctcctcgaatgtctcctcaatttcatcgcaattggtttggcctttgctcggt
ctcgtcacggtcttcttctggctttcacctcaaatgttatggttctttggaaaacgatcc
tcttcttctccgtatttttgggtcaaccggaaggacacctgccaccaatgaatccaaaca
aatttgtttggtcgaaatttatgattttctggattccaaacggtgtctgggttcttatgc
caacactcgtattgttcgcactttggaacaagcttgcattgccaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGCTTTTCGTGTCCGGAATGAT 654 665 50 Antisense
CATACACGAATGATCCGGCTAGCCC 653 211 110 Antisense
ACTTGTTGTTCGGTGGATGGGCTCT 677 101 143 Antisense
ATGGGCTCTCTATTCATCAGTGGAT 88 51 159 Antisense
GATGTATTCACTTGCTCAACAGGAC 547 409 205 Antisense
GGACGTGTAATGCTCCTCGAATGTC 192 523 226 Antisense
CGCAATTGGTTTGGCCTTTGCTCGG 510 253 264 Antisense
TTTGGAAAACGATCCTCTTCTTCTC 609 651 335 Antisense
CGGTGTCTGGGTTCTTATGCCAACA 190 245 450 Antisense
TGCCAACACTCGTATTGTTCGCACT 14 587 467 Antisense
GGAACAAGCTTGCATTGCCACCAAA 165 529 494 Antisense
Sequence Source Affymetrix Proprietary Database