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[178539_at]

Description M05B5.6 /REP_DB=WormBase Gene ID /WP=CE18081 /TR=Q21517 /GB=CAA95836.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 71      6grp_total > 50      4grp_total > 15      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 262.6
(2.9)
P 		148.8
(-3)
P 		182.1
(-1.3)
P 		265.1
(3)
P 		116
B 265.7
(2.4)
P 		148
(-3)
P 		239.3
(1.2)
P 		279.8
(3)
P 		132
C 314
(3)
P 		224.9
(0.1)
P 		131.9
(-3)
P 		305.1
(2.7)
P 		182
avr 280.8
(2.9) 		173.9
(-3) 		184.4
(-2.4) 		283.3
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 362.9
(0.7)
P 		240
(-1.5)
P 		494.3
(3)
P 		330.7
(0.1)
P 		274
(-0.9)
P 		153
(-3)
P 		341
B 304.2
(0.2)
P 		369.3
(2.1)
P 		402.3
(3)
P 		392.8
(2.7)
P 		192.6
(-3)
P 		252.8
(-1.3)
P 		210
C 278.7
(-1.1)
P 		374.7
(1.1)
P 		255.2
(-1.6)
P 		457.8
(3)
P 		193.8
(-3)
P 		203.6
(-2.8)
P 		264
avr 315.3
(0.5) 		328
(0.9) 		383.9
(2.7) 		393.8
(3) 		220.1
(-2.5) 		203.1
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 95.6
(3)
P 		32.3
(-3)
P 		47.6
(-1.5)
P 		38.8
(-2.4)
P 		63
B 84.7
(3)
P 		36.6
(-3)
P 		55.4
(-0.7)
P 		59.6
(-0.1)
P 		48
C 103.9
(3)
P 		64.6
(-1.1)
P 		46
(-3)
P 		51.4
(-2.4)
P 		58
avr 94.7
(3) 		44.5
(-3) 		49.7
(-2.4) 		49.9
(-2.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 66.9
(-0.5)
P 		85.4
(1.1)
P 		107.6
(3)
P 		83.9
(1)
P 		82.7
(0.9)
P 		37.2
(-3)
P 		70
B 105.8
(0.7)
P 		122.9
(3)
P 		97.7
(-0.4)
P 		104.1
(0.5)
P 		78.3
(-3)
P 		94.3
(-0.8)
P 		45
C 103.3
(1.7)
P 		114.3
(3)
P 		65
(-2.7)
P 		92.1
(0.4)
P 		62.7
(-3)
P 		68.2
(-2.4)
P 		52
avr 92
(0.7) 		107.5
(3) 		90.1
(0.4) 		93.4
(0.9) 		74.6
(-1.8) 		66.6
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2073
Sequence Type Exemplar sequence
Representative Public ID M05B5.6 NCBI
Target Description M05B5.6 /REP_DB=WormBase Gene ID /WP=CE18081 /TR=Q21517 /GB=CAA95836.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059630 NCBI Caenorhabditis elegans M05B5.6 (M05B5.6) mRNA, complete cds. 11/11 None
SNAP00000017388 ENSEMBL cdna:SNAP chromosome:CEL140:I:7191184:7193596:1 11/11 None
GENEFINDER00000017395 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7191193:7193596:1 11/11 None
M05B5.6.1 ENSEMBL cdna:known chromosome:CEL140:I:7191184:7193796:1 gene:M05B5.6 11/11 None
M05B5.6.2 ENSEMBL cdna:known chromosome:CEL140:I:7191193:7193840:1 gene:M05B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7191123-7193527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M05B5.6
Entrez Gene 3565192 Entrez gene
SwissProt Q21517 EMBL-EBI
WormBase CE18081 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95836 Hypothetical protein M05B5.6 [Caenorhabditis elegans] ref|NP_492031.1| M05B5.6 [Caenorhabditis elegans] 0.0
blast CAE74250 Hypothetical protein CBG21936 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492031.1 6 89-111,121-143,150-172,187-206,227-249,306-328
M05B5.6.1 6 89-111,121-143,150-172,187-206,227-249,306-328
M05B5.6.2 6 89-111,121-143,150-172,187-206,227-249,306-328
SNAP00000017388 6 92-114,124-146,153-175,190-209,230-252,309-331
GENEFINDER00000017395 6 89-111,121-143,150-172,187-206,227-249,306-328
Sequence
Target Sequence 
>C. ELEGANS:178539_AT
gctggttattcttcaagcagtcactaaaacatcaacaatgatgattggagaagttgatgc
aaatgatatacttgatacaaatcaatggattccaagtattcttgtacttgtttttgaaat
tattacagtaatcctcctgatgaatttgatggtgtcacttgcggttggcgatgttactta
tttgaacaatacagctcaagataaattactgaagatcaaagtaaattttgtaattgaagc
tcttcaaatcagtgaacaatttcaaaatgaaatgttccgacttcacacaaaaaagacacc
aaatgtgttagtcattaacagcgacggaacttatatttcggaatttgatgttttcccaca
ttctgcaagtgtggccatttcagatgaggcattcaaaatcagtttcatggaaaccggaat
gcgattacgtatcaagacatcaaaaggacgtgtaaagacagctacagtcagcaaatgtga
cattgaatgcattgagtctactgaatctggaattccagtaatcgattctactcctgattc
gagaatttatgaggatacaagtagctgctggaacggatatgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTTATTCTTCAAGCAGTCACT 466 293 831 Antisense
ACAGTAATCCTCCTGATGAATTTGA 525 107 955 Antisense
TTGATGGTGTCACTTGCGGTTGGCG 208 707 976 Antisense
GCGGTTGGCGATGTTACTTATTTGA 229 291 991 Antisense
ATGAAATGTTCCGACTTCACACAAA 322 45 1097 Antisense
ATTTGATGTTTTCCCACATTCTGCA 220 17 1173 Antisense
ACATTCTGCAAGTGTGGCCATTTCA 189 105 1188 Antisense
GGAAACCGGAATGCGATTACGTATC 452 525 1239 Antisense
GAATGCATTGAGTCTACTGAATCTG 242 331 1315 Antisense
AGTAATCGATTCTACTCCTGATTCG 547 61 1347 Antisense
GTAGCTGCTGGAACGGATATGCCAA 139 457 1391 Antisense
Sequence Source Affymetrix Proprietary Database