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[178537_at]

Description T06D8.2 /REP_DB=WormBase Gene ID /WP=CE21155 /TR=Q22249 /GB=CAA88965.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 44      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 106.9
(3)
P 		99.4
(2.1)
A 		78.1
(-0.6)
A 		59.5
(-3)
A 		47
B 60.7
(-2.8)
P 		92.4
(3)
A 		59.8
(-3)
A 		62.6
(-2.5)
A 		33
C 115.6
(3)
P 		96.9
(1.1)
A 		64.8
(-2.1)
A 		55.3
(-3)
A 		60
avr 94.4
(2.7) 		96.2
(3) 		67.6
(-1.6) 		59.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 83.3
(2)
A 		90.9
(3)
P 		44.7
(-3)
A 		66
(-0.2)
A 		72
(0.5)
A 		75.9
(1.1)
A 		46
B 68.9
(1.2)
P 		47.5
(-1.7)
A 		82
(3)
A 		61
(0.1)
A 		55.1
(-0.7)
A 		38.1
(-3)
A 		44
C 96.5
(2.3)
P 		75.5
(0.8)
M 		106.1
(3)
M 		21.9
(-3)
A 		77.4
(1)
A 		33.6
(-2.2)
A 		84
avr 82.9
(3) 		71.3
(0.9) 		77.6
(2.1) 		49.6
(-2.9) 		68.2
(0.4) 		49.2
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 38.9
(3)
P 		21.6
(-0.4)
A 		20.4
(-0.7)
A 		8.7
(-3)
A 		30
B 19.4
(0.9)
P 		22.8
(3)
A 		13.9
(-2.6)
A 		13.3
(-3)
A 		10
C 38.3
(3)
P 		27.9
(0.8)
A 		22.6
(-0.2)
A 		9.3
(-3)
A 		29
avr 32.2
(3) 		24.1
(0.8) 		19
(-0.6) 		10.4
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 15.4
(-1.5)
A 		32.3
(3)
P 		9.7
(-3)
A 		16.7
(-1.1)
A 		21.7
(0.2)
A 		18.5
(-0.7)
A 		23
B 24
(3)
P 		15.8
(-2)
A 		19.9
(0.5)
A 		16.2
(-1.8)
A 		22.4
(2)
A 		14.2
(-3)
A 		10
C 35.8
(3)
P 		23
(0.6)
M 		27
(1.3)
M 		4.4
(-3)
A 		25
(0.9)
A 		11.3
(-1.7)
A 		31
avr 25.1
(3) 		23.7
(2.3) 		18.9
(0.1) 		12.4
(-3) 		23
(2) 		14.7
(-1.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2835
Sequence Type Exemplar sequence
Representative Public ID T06D8.2 NCBI
Target Description T06D8.2 /REP_DB=WormBase Gene ID /WP=CE21155 /TR=Q22249 /GB=CAA88965.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063999 NCBI Caenorhabditis elegans T06D8.2 (T06D8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000001126 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11226585:11232690:1 11/11 None
T06D8.2 ENSEMBL cdna:known chromosome:CEL140:II:11226585:11232741:1 gene:T06D8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001108 3/11 Cross Hyb Matching Probes None
SNAP00000001110 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11226581-11232687(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D8.2
Entrez Gene 174711 Entrez gene
SwissProt Q22249 EMBL-EBI
WormBase CE32931 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6289 nucleotide-excision repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
4518 nuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88965 Hypothetical protein T06D8.2 [Caenorhabditis elegans] ref|NP_496400.2| T06D8.2 [Caenorhabditis elegans] 0.0
blast CAE59550 Hypothetical protein CBG02946 [Caenorhabditis briggsae] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR001943 EMBL-EBI UvrB/UvrC protein 8.6E-12
Sequence
Target Sequence 
>C. ELEGANS:178537_AT
agctgtttgttggctcatttgctcaaagagccactattcacagtttacaaagatgtgctt
cttctctggcatcacttttgtacttcgaggcttccaaatatgaatcttgagaagtatatt
cagagagttgcatccgagacaagtgaaattctagcgacaagagtgttgtctagtgaaaaa
cgactagtttcggaaactttgacagttttccgagatggctcgaaactcccttcaatcgcc
aaatcttatggaaccaaattgctctcttcaaactctaaaaatctgaaaggaagagctata
ttgattgaggtcattgcaaaactctatggtgttccgaatgagccaacaggattaaacgat
aaagtggtcgctggatttgccacaaagtgcatcagaacttctgatccacaaatccgaact
attggaaaagatctaatggtgaagctttacaagaatggatccataaaggtcgttcgttcc
gaactggaaaagttcgcctcctctgattccaacaatcccacttaccagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGTTTGTTGGCTCATTTGCTCA 59 81 1390 Antisense
TGCTCAAAGAGCCACTATTCACAGT 345 579 1409 Antisense
CACTTTTGTACTTCGAGGCTTCCAA 44 195 1462 Antisense
ACTTTGACAGTTTTCCGAGATGGCT 323 101 1585 Antisense
TCCGAGATGGCTCGAAACTCCCTTC 384 595 1598 Antisense
GAACCAAATTGCTCTCTTCAAACTC 149 345 1640 Antisense
GGTCGCTGGATTTGCCACAAAGTGC 676 501 1755 Antisense
GAACTTCTGATCCACAAATCCGAAC 623 349 1784 Antisense
GATCCATAAAGGTCGTTCGTTCCGA 85 415 1847 Antisense
GAACTGGAAAAGTTCGCCTCCTCTG 561 347 1870 Antisense
TCCAACAATCCCACTTACCAGAAGA 64 587 1897 Antisense
Sequence Source Affymetrix Proprietary Database