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[178536_at]

Description W04A8.2 /REP_DB=WormBase Gene ID /WP=CE16536 /TR=Q9XUM3 /GB=CAB04903.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 11.1
(-2.6)
A 		45.5
(0.5)
A 		6.5
(-3)
A 		72.5
(3)
P 		66
B 32.9
(2.7)
M 		34.2
(3)
A 		7.5
(-3)
A 		30.8
(2.2)
A 		27
C 38.5
(-0.2)
P 		35.7
(-0.5)
A 		13.5
(-3)
A 		66.6
(3)
P 		53
avr 27.5
(-0.7) 		38.5
(0.7) 		9.2
(-3) 		56.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41.7
(2.8)
A 		4.9
(-3)
A 		34.8
(1.7)
P 		32.3
(1.3)
A 		5.1
(-3)
A 		43.3
(3)
A 		38
B 20.5
(0.6)
A 		24.4
(1.5)
P 		6.1
(-3)
A 		30.4
(3)
P 		18.1
(-0)
P 		16.5
(-0.4)
M 		24
C 2.1
(-3)
A 		25.2
(1.6)
A 		5
(-2.4)
A 		32.2
(3)
A 		9.2
(-1.6)
A 		9
(-1.6)
A 		30
avr 21.4
(0.1) 		18.2
(-0.9) 		15.3
(-1.7) 		31.6
(3) 		10.8
(-3) 		22.9
(0.5) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.1
(-1.4)
A 		9.9
(2.5)
A 		1.7
(-3)
A 		10.6
(3)
P 		9
B 10.5
(3)
M 		8.5
(1.6)
A 		1.7
(-3)
A 		6.6
(0.3)
A 		9
C 12.7
(3)
P 		10.3
(1.2)
A 		4.7
(-3)
A 		11.2
(1.9)
P 		8
avr 9.1
(2.6) 		9.6
(3) 		2.7
(-3) 		9.5
(2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.7
(1.1)
A 		1.7
(-2.9)
A 		7.6
(1.1)
P 		8.2
(1.5)
A 		1.5
(-3)
A 		10.5
(3)
A 		9
B 7.1
(2.1)
A 		8.1
(3)
P 		1.5
(-3)
A 		8
(2.9)
P 		7.4
(2.4)
P 		6.2
(1.3)
M 		7
C 0.8
(-3)
A 		7.7
(3)
A 		1.3
(-2.6)
A 		6.5
(2)
A 		3
(-1.1)
A 		3
(-1.1)
A 		7
avr 5.2
(-0.5) 		5.8
(0.4) 		3.5
(-3) 		7.6
(3) 		4
(-2.3) 		6.6
(1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1011
Sequence Type Exemplar sequence
Representative Public ID W04A8.2 NCBI
Target Description W04A8.2 /REP_DB=WormBase Gene ID /WP=CE16536 /TR=Q9XUM3 /GB=CAB04903.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061020 NCBI Caenorhabditis elegans W04A8.2 (W04A8.2) mRNA, complete cds. 11/11 None
W04A8.2 ENSEMBL cdna:known chromosome:CEL140:I:13848721:13849081:1 gene:W04A8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006525 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13848651-13849012(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04A8.2
Entrez Gene 189181 Entrez gene
SwissProt Q9XUM3 EMBL-EBI
WormBase CE16536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04903 Hypothetical protein W04A8.2 [Caenorhabditis elegans] ref|NP_493421.1| W04A8.2 [Caenorhabditis elegans] 6.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178536_AT
tgtttggtcttttcaatcttttcaaaaaacttcatcatttatttccagaaatgctctcca
atcaaacgagggtgtggtgtcaccccggaaaacgtggcactatcatctgcaaaatcttca
tagacaatcagcattcggagagtaccacgaaacgagagaccggaccaaaatggaagatat
ccaaacagatttgtcttctctgaaaacgactggattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTGGTCTTTTCAATCTTTTCAA 217 561 66 Antisense
TATTTCCAGAAATGCTCTCCAATCA 35 663 105 Antisense
AATGCTCTCCAATCAAACGAGGGTG 203 165 115 Antisense
CAAACGAGGGTGTGGTGTCACCCCG 360 191 128 Antisense
CACCCCGGAAAACGTGGCACTATCA 177 201 146 Antisense
GGCACTATCATCTGCAAAATCTTCA 441 535 161 Antisense
AATCTTCATAGACAATCAGCATTCG 194 171 178 Antisense
CAATCAGCATTCGGAGAGTACCACG 388 181 190 Antisense
GAGTACCACGAAACGAGAGACCGGA 272 399 205 Antisense
ATCCAAACAGATTTGTCTTCTCTGA 294 41 244 Antisense
TCTTCTCTGAAAACGACTGGATTGA 436 617 259 Antisense
Sequence Source Affymetrix Proprietary Database