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[178535_at]

Description C38D4.4 /REP_DB=WormBase Gene ID /WP=CE00917 /TR=Q18509 /GB=CAA86317.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 156
(-2)
A 		135.7
(-3)
A 		199.6
(0.3)
A 		252.9
(3)
P 		117
B 153.2
(-3)
A 		191
(-1.5)
A 		184.4
(-1.7)
P 		301.4
(3)
P 		148
C 138.8
(-2.9)
A 		135.7
(-3)
A 		201
(-1.3)
P 		367.6
(3)
P 		232
avr 149.3
(-3) 		154.1
(-2.8) 		195
(-1.3) 		307.3
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 933
1 2 3 4 5 6 range
A 154.7
(-2.6)
A 		101.8
(-3)
A 		220.1
(-2.2)
M 		290.3
(-1.7)
P 		714.3
(1.3)
P 		949.2
(3)
P 		847
B 97.6
(-3)
A 		143.9
(-2.7)
A 		188.6
(-2.4)
A 		340.3
(-1.3)
P 		645.2
(0.8)
P 		973.2
(3)
P 		876
C 40.7
(-3)
A 		167.2
(-2.1)
A 		196.9
(-1.9)
A 		395.7
(-0.5)
P 		578.4
(0.8)
P 		880.2
(3)
P 		840
avr 97.7
(-3) 		137.6
(-2.7) 		201.9
(-2.3) 		342.1
(-1.2) 		646
(0.9) 		934.2
(3) 		837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 56.8
(3)
A 		29.4
(-3)
A 		52.2
(2)
A 		37
(-1.3)
P 		27
B 48.9
(-1.3)
A 		47.2
(-1.7)
A 		42.7
(-3)
P 		64.2
(3)
P 		22
C 45.9
(-1.7)
A 		39
(-3)
A 		70
(3)
P 		62
(1.5)
P 		31
avr 50.5
(1.4) 		38.5
(-3) 		55
(3) 		54.4
(2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 28.5
(-3)
A 		36.2
(-2.8)
A 		47.9
(-2.4)
M 		73.6
(-1.7)
P 		215.6
(2.5)
P 		231.1
(3)
P 		203
B 34
(-3)
A 		47.9
(-2.7)
A 		45.8
(-2.8)
A 		90.1
(-2)
P 		262.1
(1.2)
P 		362.9
(3)
P 		329
C 15.1
(-3)
A 		51
(-2.2)
A 		50.1
(-2.2)
A 		79.6
(-1.6)
P 		187.2
(0.7)
P 		294.7
(3)
P 		280
avr 25.9
(-3) 		45
(-2.6) 		47.9
(-2.5) 		81.1
(-1.8) 		221.6
(1.3) 		296.2
(3) 		270
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6315
Sequence Type Exemplar sequence
Representative Public ID C38D4.4 NCBI
Target Description C38D4.4 /REP_DB=WormBase Gene ID /WP=CE00917 /TR=Q18509 /GB=CAA86317.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065587 NCBI Caenorhabditis elegans C38D4.4 (C38D4.4) mRNA, complete cds. 11/11 None
SNAP00000018664 ENSEMBL cdna:SNAP chromosome:CEL140:III:4793068:4795242:1 10/11 None
GENEFINDER00000018675 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4793068:4795242:1 11/11 None
C38D4.4 ENSEMBL cdna:known chromosome:CEL140:III:4793048:4795360:1 gene:C38D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4793067-4795242(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D4.4
Entrez Gene 175635 Entrez gene
SwissProt Q18509 EMBL-EBI
WormBase CE00917 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86317 Hypothetical protein C38D4.4 [Caenorhabditis elegans] ref|NP_497988.1| C38D4.4 [Caenorhabditis elegans] 0.0
blast CAE71129 Hypothetical protein CBG17983 [Caenorhabditis briggsae] 9.0E-67
blast CAB03154 Hypothetical protein F58G11.3 [Caenorhabditis elegans] ref|NP_506384.1| F58G11.3 [Caenorhabditis elegans] 2.0E-66
Sequence
Target Sequence 
>C. ELEGANS:178535_AT
tgttcgtccgatagtgtctgtcgcagaaagtatgaaaggactcacagtgagtgcccgtag
cgtaatgggaactccaaaagatcttcctggtgtgtctaacccgattaaaaacacagctcg
gggaagtaataagcctcgaaatgatctggcatcttcgaaagcgagtaaggatcttgttgt
tcctgtgatgaaaactacgtgtatcaaatcacttgaagatacttctaccagtagttcgaa
tccttcaacattgcaattatctactgcctctacctctgcaacagatcagaaactgccaaa
aatgagctttggaagacagatagaaaaaggatcgtcgattccagggagacatatatctct
tgctctcacggaaattaaaaaccaaaaagttattgcggcttctattgttggaaagagtgc
caaaacttctacaaaagtgccatccacgactagaagtgtagttctcccaccaatgtcaaa
aggaccaggattggcacgttctcgtaacttttcaccacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCGTCCGATAGTGTCTGTCGCA 313 563 1083 Antisense
TCACAGTGAGTGCCCGTAGCGTAAT 241 627 1124 Antisense
AAGATCTTCCTGGTGTGTCTAACCC 373 155 1160 Antisense
AGCCTCGAAATGATCTGGCATCTTC 709 83 1214 Antisense
TCTACCAGTAGTTCGAATCCTTCAA 592 613 1306 Antisense
TTGCAATTATCTACTGCCTCTACCT 332 703 1333 Antisense
GCCTCTACCTCTGCAACAGATCAGA 188 283 1348 Antisense
ATATATCTCTTGCTCTCACGGAAAT 410 19 1433 Antisense
CTAGAAGTGTAGTTCTCCCACCAAT 344 225 1532 Antisense
AAGGACCAGGATTGGCACGTTCTCG 272 161 1562 Antisense
GTTCTCGTAACTTTTCACCACAACA 429 443 1580 Antisense
Sequence Source Affymetrix Proprietary Database