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[178534_s_at]

Description T28D6.6 /REP_DB=WormBase Gene ID /WP=CE24022 /TR=Q9TVG4 /GB=CAB55097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 77      6grp_total > 39      4grp_total > 59      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1570
1 2 3 4 range
A 2448.2
(0.4)
P 		2923
(3)
P 		2734.7
(2)
P 		1822.1
(-3)
P 		1101
B 2779.8
(1)
P 		2859.4
(1.3)
P 		3307.7
(3)
P 		1746.1
(-3)
P 		1562
C 2802.7
(2.5)
P 		2897.6
(3)
P 		2795.2
(2.5)
P 		1737.9
(-3)
P 		1160
avr 2676.9
(1.6) 		2893.3
(2.7) 		2945.9
(3) 		1768.7
(-3) 		1177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 1849.6
(3)
P 		1474.7
(-0.6)
P 		1337.5
(-2)
P 		1232.9
(-3)
P 		1606.6
(0.6)
P 		1453.2
(-0.9)
P 		617
B 1669
(2.2)
P 		1459.3
(-0.4)
P 		1255
(-3)
P 		1592.8
(1.3)
P 		1728.9
(3)
P 		1423.6
(-0.9)
P 		474
C 1304.2
(-2)
P 		1457.9
(0.6)
P 		1339.9
(-1.4)
P 		1372.9
(-0.9)
P 		1244.4
(-3)
P 		1603.7
(3)
P 		359
avr 1607.6
(3) 		1464
(0.1) 		1310.8
(-3) 		1399.5
(-1.2) 		1526.6
(1.4) 		1493.5
(0.7) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 708
1 2 3 4 range
A 891.4
(3)
P 		634.5
(0.5)
P 		714.9
(1.3)
P 		266.7
(-3)
P 		625
B 886.5
(3)
P 		706.2
(0.9)
P 		766.5
(1.6)
P 		372.1
(-3)
P 		514
C 927.8
(2.6)
P 		833.1
(1.8)
P 		974.2
(3)
P 		293
(-3)
P 		681
avr 901.9
(3) 		724.6
(1.2) 		818.5
(2.2) 		310.6
(-3) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 341
(-1.7)
P 		524.5
(3)
P 		291.3
(-3)
P 		312.7
(-2.4)
P 		484.8
(2)
P 		353.8
(-1.4)
P 		233
B 580.7
(1.2)
P 		485.7
(-0.3)
P 		304.8
(-3)
P 		421.9
(-1.2)
P 		702.4
(3)
P 		530.9
(0.4)
P 		398
C 483.4
(1.8)
P 		444.9
(0.9)
P 		341
(-1.5)
P 		276.1
(-3)
P 		402.7
(-0.1)
P 		536.8
(3)
P 		261
avr 468.4
(1.3) 		485
(1.8) 		312.4
(-3) 		336.9
(-2.3) 		530
(3) 		473.8
(1.5) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6183
Sequence Type Exemplar sequence
Representative Public ID T28D6.6 NCBI
Target Description T28D6.6 /REP_DB=WormBase Gene ID /WP=CE24022 /TR=Q9TVG4 /GB=CAB55097.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067056 NCBI Caenorhabditis elegans T28D6.6 (T28D6.6) mRNA, complete cds. 11/11 A 
SNAP00000007222 ENSEMBL cdna:SNAP chromosome:CEL140:III:11318334:11331588:-1 11/11 None
GENEFINDER00000007281 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11326141:11331957:-1 11/11 None
T28D6.6 ENSEMBL cdna:known chromosome:CEL140:III:11326531:11342984:-1 gene:T28D6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11326636-11342950(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28D6.6
Entrez Gene 176563 Entrez gene
SwissProt Q9TVG4 EMBL-EBI
WormBase CE24022 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17808_AT GTP-binding protein, putative at
ATH1-121501:252883_AT GTP-binding protein, putative at
CANINE:1604205_AT similar to developmentally regulated GTP binding protein 1 cfa
CANINE_2:CFA.20114.1.S1_S_AT similar to developmentally regulated GTP binding protein 1 cfa
CANINE_2:CFAAFFX.20304.1.S1_AT similar to developmentally regulated GTP binding protein 1 cfa
DROSOPHILA_2:1624318_AT upstream of RpIII128 dm
DROSGENOME1:141617_AT upstream of RpIII128 dm
CHICKEN:GGA.9818.1.S1_S_AT developmentally regulated GTP binding protein 1 gga
HG-U133A:202810_AT developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:202810_AT developmentally regulated GTP binding protein 1 hs
HG-FOCUS:202810_AT developmentally regulated GTP binding protein 1 hs
HG-U133A_2:202810_AT developmentally regulated GTP binding protein 1 hs
U133_X3P:G4758795_3P_AT developmentally regulated GTP binding protein 1 hs
HG-U95AV2:41606_AT developmentally regulated GTP binding protein 1 hs
U133_X3P:HS.39297.0.A1_3P_AT Developmentally regulated GTP binding protein 1 hs
U133_X3P:HS.323713.0.S1_3P_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:235636_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:235636_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:235637_S_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:235637_S_AT Developmentally regulated GTP binding protein 1 hs
HG-U133_PLUS_2:236537_AT Developmentally regulated GTP binding protein 1 hs
HG-U133B:236537_AT Developmentally regulated GTP binding protein 1 hs
HG-U95B:46364_AT Developmentally regulated GTP binding protein 1 hs
HG-U95E:75990_AT Developmentally regulated GTP binding protein 1 hs
MU11KSUBA:D10715_S_AT developmentally regulated GTP binding protein 1 mm
MG-U74AV2:98020_AT developmentally regulated GTP binding protein 1 mm
MOE430A:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430A_2:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1434688_X_AT developmentally regulated GTP binding protein 1 mm
MOE430A:1448336_AT developmentally regulated GTP binding protein 1 mm
MOUSE430A_2:1448336_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1448336_AT developmentally regulated GTP binding protein 1 mm
MOE430B:1447752_X_AT developmentally regulated GTP binding protein 1 mm
MOUSE430_2:1447752_X_AT developmentally regulated GTP binding protein 1 mm
MG-U74CV2:166330_I_AT Developmentally regulated GTP binding protein 1, mRNA (cDNA clone MGC:49486 IMAGE:5351885) mm
RAE230B:1391602_AT developmentally regulated GTP binding protein 1 (predicted) rn
RAT230_2:1391602_AT developmentally regulated GTP binding protein 1 (predicted) rn
RAE230B:1379116_AT Developmentally regulated GTP binding protein 1 (predicted) rn
RAT230_2:1379116_AT Developmentally regulated GTP binding protein 1 (predicted) rn
YEAST_2:1773564_AT Member of the DRG family of GTP-binding proteins; interacts with translating ribosomes Sc
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 0.0
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 0.0
blast XP_394753 PREDICTED: similar to ENSANGP00000016179 [Apis mellifera] 1.0E-163
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 1.0E-163
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 1.0E-161
blast CAB55097 Hypothetical protein T28D6.6 [Caenorhabditis elegans] emb|CAB57908.1| Hypothetical protein T28D6.6 [Caenorhabditis elegans] ref|NP_499457.1| T28D6.6 [Caenorhabditis elegans] 1.0E-146
blast CAE67642 Hypothetical protein CBG13201 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR004095 EMBL-EBI TGS domain 2.7E-37
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 6.0E-73
Pfam IPR004095 EMBL-EBI TGS domain 3.8E-16
Pfam IPR004095 EMBL-EBI TGS domain 3.3E-13
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 5.4E-95
Pfam IPR004095 EMBL-EBI TGS domain 2.7E-37
Pfam IPR006169 EMBL-EBI GTP1/OBG sub-domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178534_S_AT
ggaaggattcggtatccgtctgaacaagcagccaccaaatattggatataagcggaagga
gaagggaggcatcaatttgacgatgctcgttccacaatctgaacttgatttggatcttgt
caagagtatccttgccgaatatcgtattcataatgcagacatcacacttcgctacgacgc
tacttccgaggatttgattgatgtgattgagggaaatcgaatctatattccgtgcatcta
tgtgctcaataaaatcgatcagatctcgattgaagagctcgatattatctaccgtatccc
gcataccgtaccaatttccgctcatcataagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGGATTCGGTATCCGTCTGAAC 190 533 501 Antisense
GTATCCGTCTGAACAAGCAGCCACC 464 455 512 Antisense
GAGAAGGGAGGCATCAATTTGACGA 527 391 559 Antisense
ATTTGACGATGCTCGTTCCACAATC 87 19 575 Antisense
AGAGTATCCTTGCCGAATATCGTAT 54 69 623 Antisense
TAATGCAGACATCACACTTCGCTAC 50 637 651 Antisense
CTACGACGCTACTTCCGAGGATTTG 377 223 672 Antisense
AATCGAATCTATATTCCGTGCATCT 325 169 715 Antisense
ATTCCGTGCATCTATGTGCTCAATA 689 7 727 Antisense
TCGATATTATCTACCGTATCCCGCA 700 603 779 Antisense
TACCAATTTCCGCTCATCATAAGTG 388 649 809 Antisense
Sequence Source Affymetrix Proprietary Database