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[178533_at]

Description F41D3.2 /REP_DB=WormBase Gene ID /WP=CE16021 /TR=O45506 /GB=CAB04373.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.2
(-3)
A 		2.8
(0.1)
A 		4.3
(3)
A 		1.5
(-2.4)
A 		3
B 1.4
(-3)
A 		4.4
(3)
A 		1.7
(-2.4)
A 		2.9
(-0)
A 		3
C 2.4
(-0)
A 		3.6
(3)
A 		1.2
(-3)
A 		3.2
(2)
A 		2
avr 1.7
(-3) 		3.6
(3) 		2.4
(-0.8) 		2.5
(-0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3
(3)
A 		1.7
(-2.6)
A 		1.6
(-3)
A 		2.4
(0.4)
A 		1.9
(-1.7)
A 		2.4
(0.4)
A 		1
B 1
(-3)
A 		1.8
(-1.7)
A 		4.6
(3)
A 		2.9
(0.2)
A 		2.6
(-0.3)
A 		1.1
(-2.8)
A 		4
C 2.1
(-0.3)
A 		1.7
(-2.5)
A 		1.6
(-3)
A 		2.7
(3)
A 		1.9
(-1.4)
A 		2
(-0.8)
A 		1
avr 2
(-1.2) 		1.7
(-3) 		2.6
(2.4) 		2.7
(3) 		2.1
(-0.6) 		1.8
(-2.4) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.4
(-1.7)
A 		0.6
(-0.3)
A 		1.1
(3)
A 		0.2
(-3)
A 		1
B 0.4
(-3)
A 		1.1
(3)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		1
C 0.8
(1)
A 		1
(3)
A 		0.4
(-3)
A 		0.5
(-2)
A 		1
avr 0.5
(-1.8) 		0.9
(3) 		0.6
(-0.6) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(0)
A 		0.6
(3)
A 		0.4
(-3)
A 		0.6
(3)
A 		0.6
(3)
A 		0.6
(3)
A 		0
B 0.3
(-3)
A 		0.6
(-0.8)
A 		1.1
(3)
A 		0.8
(0.8)
A 		1.1
(3)
A 		0.4
(-2.3)
A 		1
C 0.8
(3)
A 		0.5
(-1.5)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0.6
(-0)
A 		0.7
(1.5)
A 		0
avr 0.5
(-3) 		0.6
(-1) 		0.6
(-1) 		0.6
(-1) 		0.8
(3) 		0.6
(-1) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2074
Sequence Type Exemplar sequence
Representative Public ID F41D3.2 NCBI
Target Description F41D3.2 /REP_DB=WormBase Gene ID /WP=CE16021 /TR=O45506 /GB=CAB04373.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060690 NCBI Caenorhabditis elegans F41D3.2 (F41D3.2) mRNA, complete cds. 11/11 None
SNAP00000037767 ENSEMBL cdna:SNAP chromosome:CEL140:I:12255893:12258332:1 11/11 None
GENEFINDER00000037782 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12255893:12258332:1 11/11 None
F41D3.2 ENSEMBL cdna:known chromosome:CEL140:I:12255893:12258332:1 gene:F41D3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12255823-12258263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D3.2
Entrez Gene 185602 Entrez gene
WormBase CE16021 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04373 Hypothetical protein F41D3.2 [Caenorhabditis elegans] ref|NP_493091.1| F41D3.2 [Caenorhabditis elegans] 0.0
blast CAB04375 Hypothetical protein F41D3.4 [Caenorhabditis elegans] ref|NP_493093.1| F41D3.4 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493091.1 8 21-43,81-100,145-167,192-214,259-281,301-323,330-352,362-379
F41D3.2 8 21-43,81-100,145-167,192-214,259-281,301-323,330-352,362-379
SNAP00000037767 8 21-43,81-100,145-167,192-214,259-281,301-323,330-352,362-379
GENEFINDER00000037782 8 21-43,81-100,145-167,192-214,259-281,301-323,330-352,362-379
Sequence
Target Sequence 
>C. ELEGANS:178533_AT
tcaccggacagtgtaccttgtcgcaagaatttcacagattttgaagaacgtgtgcggctg
gagaagccagatttcgcattcatgctcaccaggtacttggcaatcggggagctccgtcct
ccgaacgtgacaacactcgagcaagattctgtgtaccaagtgatgaagcaacaaattcta
aaactatctgaaaatgtgaaatacaaaatctacattatgaatgcatttcccagaatcgat
cagccgtcagttgagatgatagcgaaatggctgaaaaatggaacaagcccggaggaagtt
gataaacgactgttcaactcgaaagacgcggtaatcgagcagcaaagttacgagctaaca
agagaaagatatgcacaactggaaaaagattgtggtggaaagtgtatacttgtggactat
aagccaacatttttcaacccacaatcaggattctaccggatgtttgatgatcgaggcttt
tcatattacacgtcaggcttacatttgacaccgcatggcgttgaacttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCGGACAGTGTACCTTGTCGCA 83 625 1495 Antisense
TGGAGAAGCCAGATTTCGCATTCAT 419 549 1553 Antisense
GCATTCATGCTCACCAGGTACTTGG 84 309 1570 Antisense
TACTTGGCAATCGGGGAGCTCCGTC 455 643 1588 Antisense
TCCTCCGAACGTGACAACACTCGAG 369 591 1611 Antisense
CCCAGAATCGATCAGCCGTCAGTTG 651 255 1723 Antisense
TATAAGCCAACATTTTTCAACCCAC 559 655 1912 Antisense
CAACCCACAATCAGGATTCTACCGG 148 187 1929 Antisense
GAGGCTTTTCATATTACACGTCAGG 310 401 1967 Antisense
TCAGGCTTACATTTGACACCGCATG 307 623 1987 Antisense
GACACCGCATGGCGTTGAACTTGTT 508 365 2001 Antisense
Sequence Source Affymetrix Proprietary Database