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[178532_at]

Description W09D6.2 /REP_DB=WormBase Gene ID /WP=CE19016 /TR=Q9XUJ6 /GB=CAB04942.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 17      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 11.9
(-2.6)
A 		8.1
(-2.9)
A 		6.8
(-3)
A 		76.8
(3)
A 		70
B 4.8
(-3)
A 		48.7
(2.5)
A 		52.5
(3)
A 		40.8
(1.5)
A 		48
C 27
(-2.8)
A 		48.4
(-1.6)
A 		23.1
(-3)
A 		131
(3)
A 		108
avr 14.6
(-3) 		35.1
(-1.2) 		27.5
(-1.9) 		82.9
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 12.7
(-2)
A 		23.1
(-0.9)
A 		58.4
(3)
A 		3.9
(-3)
A 		8.1
(-2.5)
A 		13.8
(-1.9)
A 		55
B 23
(0.5)
A 		15.1
(-1.1)
A 		21.9
(0.3)
A 		35.4
(3)
A 		5.7
(-3)
A 		23.4
(0.6)
A 		30
C 6.9
(-3)
A 		42.9
(3)
A 		9.3
(-2.6)
A 		16.3
(-1.4)
A 		10
(-2.5)
A 		17.4
(-1.3)
A 		36
avr 14.2
(-1.3) 		27
(2.2) 		29.9
(3) 		18.5
(-0.1) 		7.9
(-3) 		18.2
(-0.2) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 4.3
(-1.4)
A 		1.8
(-3)
A 		1.8
(-3)
A 		11.2
(3)
A 		9
B 1.5
(-3)
A 		12
(2.9)
A 		12.2
(3)
A 		8.7
(1)
A 		11
C 8.9
(-2.7)
A 		13.9
(-0.5)
A 		8.1
(-3)
A 		22.1
(3)
A 		14
avr 4.9
(-3) 		9.2
(-0.2) 		7.4
(-1.4) 		14
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		8.2
(0.7)
A 		12.7
(3)
A 		1
(-3)
A 		2.4
(-2.3)
A 		3.4
(-1.8)
A 		12
B 8
(1.8)
A 		5
(-0.7)
A 		5.3
(-0.5)
A 		9.4
(3)
A 		2.3
(-3)
A 		8.7
(2.4)
A 		7
C 2.6
(-2.9)
A 		13.1
(3)
A 		2.4
(-3)
A 		3.3
(-2.5)
A 		3.2
(-2.6)
A 		5.8
(-1.1)
A 		11
avr 4.3
(-1.4) 		8.8
(3) 		6.8
(1.1) 		4.6
(-1.1) 		2.6
(-3) 		6
(0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6324
Sequence Type Exemplar sequence
Representative Public ID W09D6.2 NCBI
Target Description W09D6.2 /REP_DB=WormBase Gene ID /WP=CE19016 /TR=Q9XUJ6 /GB=CAB04942.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067024 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-261) (str-261) mRNA, complete cds. 11/11 None
GENEFINDER00000027414 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11074413:11077371:1 11/11 None
W09D6.2 ENSEMBL cdna:known chromosome:CEL140:III:11074413:11077292:1 gene:W09D6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027409 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11074408-11077288(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-261
Ensembl W09D6.2
Entrez Gene 189315 Entrez gene
SwissProt Q9XUJ6 EMBL-EBI
WormBase CE19016 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04942 Hypothetical protein W09D6.2 [Caenorhabditis elegans] ref|NP_499425.1| Seven TM Receptor family member (str-261) [Caenorhabditis elegans] 0.0
blast CAE67621 Hypothetical protein CBG13173 [Caenorhabditis briggsae] 1.0E-136
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-134
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 1.0E-131
blast CAE67621 Hypothetical protein CBG13173 [Caenorhabditis briggsae] 4.0E-94
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499425.1 4 7-29,34-56,87-109,129-151
W09D6.2 4 7-29,34-56,87-109,129-151
GENEFINDER00000027414 6 7-29,86-108,129-151,206-225,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:178532_AT
cgctccattttgtttaccgatttctgagtatgactaataaccatcatgtcaagtcatttg
attcgtggaaaatcattttgtggtttatgattccacttttaaacggggtaacttttatgg
taaccggtggaattattctgtgcgccgatcgggaaactgataggtttatgagtgaaaact
atcccgaactcgtggatgatacaacaaatatcactgatctctactacatgggagcatttt
tttggccgaagcttgagaattcgcagacggaaaaatactttagttggaaagggattatca
agctctataatggtatactttggtgtaaaaggctatcggagcatgaacaagctcatctcc
caaacaacatgctccctgaagttcaaaagtgtccagcagcaattattccacgcattggtc
tttcaaactcttattcctgtattcttgatgcatattccggcttctgcaatctatatcact
atattttttggaaaatcttcggaaattgtaggtcaaactctgagcttgactattgcaatg
tatcctgcgctgaacccattgccgactatatttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTCCATTTTGTTTACCGATTTCT 594 229 326 Antisense
ATTATTCTGTGCGCCGATCGGGAAA 21 15 457 Antisense
GTGAAAACTATCCCGAACTCGTGGA 553 463 497 Antisense
ATCACTGATCTCTACTACATGGGAG 25 29 535 Antisense
ATGGGAGCATTTTTTTGGCCGAAGC 433 49 553 Antisense
GAGCATGAACAAGCTCATCTCCCAA 441 389 664 Antisense
CAAACAACATGCTCCCTGAAGTTCA 586 191 686 Antisense
TGTCCAGCAGCAATTATTCCACGCA 437 557 715 Antisense
TCCACGCATTGGTCTTTCAAACTCT 227 589 732 Antisense
AAACTCTTATTCCTGTATTCTTGAT 653 127 750 Antisense
GAACCCATTGCCGACTATATTTATC 445 345 877 Antisense
Sequence Source Affymetrix Proprietary Database