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[178531_at]

Description K01C8.6 /REP_DB=WormBase Gene ID /WP=CE02267 /TR=Q21083 /GB=CAA88857.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 75      6grp_total > 75      4grp_total > 61      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 1183.1
(3)
P 		1061.8
(2)
P 		1139.5
(2.6)
P 		475.1
(-3)
P 		708
B 1191.4
(3)
P 		969.2
(0.9)
P 		991.4
(1.1)
P 		571
(-3)
P 		620
C 1045.2
(2.8)
P 		933.3
(1.5)
P 		1064
(3)
P 		553.6
(-3)
P 		510
avr 1139.9
(3) 		988.1
(1.5) 		1065
(2.3) 		533.2
(-3) 		607

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 875.2
(-3)
P 		936.9
(-0.8)
P 		993.4
(1.2)
P 		996.8
(1.3)
P 		956.4
(-0.1)
P 		1044.7
(3)
P 		170
B 740.8
(-3)
P 		902.3
(-0.1)
P 		949.7
(0.7)
P 		943.5
(0.6)
P 		998.4
(1.6)
P 		1076.5
(3)
P 		336
C 875.4
(-2.1)
P 		1028.4
(2.9)
P 		956.7
(0.6)
P 		1031.9
(3)
P 		846.4
(-3)
P 		1007.7
(2.2)
P 		186
avr 830.5
(-3) 		955.9
(0.5) 		966.6
(0.8) 		990.7
(1.5) 		933.7
(-0.1) 		1043
(3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 430.8
(3)
P 		230.5
(-0.3)
P 		297.9
(0.8)
P 		69.5
(-3)
P 		361
B 379.9
(3)
P 		239.4
(-0.3)
P 		229.7
(-0.5)
P 		121.7
(-3)
P 		258
C 346
(2.5)
P 		268.3
(0.8)
P 		370.8
(3)
P 		93.3
(-3)
P 		278
avr 385.6
(3) 		246.1
(0.1) 		299.5
(1.2) 		94.8
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 161.3
(-3)
P 		333.2
(3)
P 		216.3
(-1.1)
P 		252.8
(0.2)
P 		288.6
(1.4)
P 		254.3
(0.2)
P 		172
B 257.8
(-2.1)
P 		300.3
(-0.6)
P 		230.6
(-3)
P 		249.9
(-2.3)
P 		405.6
(3)
P 		401.4
(2.9)
P 		175
C 324.5
(2.4)
P 		313.8
(1.9)
P 		243.5
(-1.3)
P 		207.5
(-3)
P 		273.9
(0.1)
P 		337.3
(3)
P 		130
avr 247.9
(-1.9) 		315.8
(2.1) 		230.1
(-3) 		236.7
(-2.6) 		322.7
(2.5) 		331
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3377
Sequence Type Exemplar sequence
Representative Public ID K01C8.6 NCBI
Target Description K01C8.6 /REP_DB=WormBase Gene ID /WP=CE02267 /TR=Q21083 /GB=CAA88857.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063346 NCBI Caenorhabditis elegans K01C8.6 (K01C8.6) mRNA, complete cds. 11/11 None
SNAP00000019060 ENSEMBL cdna:SNAP chromosome:CEL140:II:8277578:8278437:-1 11/11 None
GENEFINDER00000019069 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8277578:8278437:-1 11/11 None
K01C8.6 ENSEMBL cdna:known chromosome:CEL140:II:8277544:8278438:-1 gene:K01C8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8277574-8278434(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01C8.6
Entrez Gene 186840 Entrez gene
SwissProt Q21083 EMBL-EBI
WormBase CE02267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88857 Hypothetical protein K01C8.6 [Caenorhabditis elegans] ref|NP_495747.1| K01C8.6 [Caenorhabditis elegans] 1.0E-131
blast CAA88857 Hypothetical protein K01C8.6 [Caenorhabditis elegans] ref|NP_495747.1| K01C8.6 [Caenorhabditis elegans] 1.0E-129
blast CAE57677 Hypothetical protein CBG00671 [Caenorhabditis briggsae] 1.0E-114
blast CAE57677 Hypothetical protein CBG00671 [Caenorhabditis briggsae] 1.0E-112
blast XP_424160 PREDICTED: similar to mitochondrial ribosomal protein L10 [Gallus gallus] 4.0E-10
blast XP_424160 PREDICTED: similar to mitochondrial ribosomal protein L10 [Gallus gallus] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178531_AT
agctgcgttaaaaccggagctcccaccaactgtgaacatgtgtattccaccgggacttat
taagagagaacatacgggaaagtcgaaagagtattccgacgtagagctagccttgtcgaa
tttggttcgtgattggatggtaagggaagagtttcgtgtgatggctgtatgccaattctt
accagttcctggaaggactctgtggtttgcaaaaaatcaattgcgatcaaagaatatcga
gttcagaagttacggaaataagattctgaaaaagatttttgataaaactccgatgtcatc
cctgaacacagttcttgttggaaataacgccatccttctagccaaagatatttctgctat
caaatcaattcttcaagaaaccgataaacttaattggatcgaaccacttgtaatgatggc
cgatggtagaattgtggatatggtggatgctcgcgaactagcaaaactttcttcacttga
agatcttcgagcacatacagtacagcttcttggacaacaagtcgcgcaagtcacaatttc
tctggatacagttacacgtcatctcccatcacttttggattctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCGTTAAAACCGGAGCTCCCA 150 69 117 Antisense
GAGTATTCCGACGTAGAGCTAGCCT 107 399 205 Antisense
GAGCTAGCCTTGTCGAATTTGGTTC 229 389 220 Antisense
GGCTGTATGCCAATTCTTACCAGTT 290 537 279 Antisense
TCCTGGAAGGACTCTGTGGTTTGCA 261 591 303 Antisense
GATGTCATCCCTGAACACAGTTCTT 559 409 408 Antisense
ACGCCATCCTTCTAGCCAAAGATAT 338 91 443 Antisense
GCACATACAGTACAGCTTCTTGGAC 99 317 607 Antisense
AAGTCGCGCAAGTCACAATTTCTCT 602 157 635 Antisense
TGGATACAGTTACACGTCATCTCCC 10 551 659 Antisense
ATCTCCCATCACTTTTGGATTCTCA 544 33 677 Antisense
Sequence Source Affymetrix Proprietary Database