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[178530_at]

Description C17H1.1 /REP_DB=WormBase Gene ID /WP=CE15623 /TR=O45252 /GB=CAB07165.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.9
(-3)
A 		12.5
(-1.1)
A 		14.3
(-0.8)
A 		33.4
(3)
A 		31
B 19.9
(0.6)
A 		32
(3)
A 		2.9
(-2.9)
A 		2.3
(-3)
A 		30
C 12.3
(-2.6)
A 		24.2
(-1.1)
M 		8.6
(-3)
A 		58.7
(3)
A 		50
avr 11.7
(-2.2) 		22.9
(0.7) 		8.6
(-3) 		31.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 32.3
(3)
A 		5.5
(-2.2)
A 		15.6
(-0.2)
A 		29.7
(2.5)
A 		16.8
(0)
A 		1.3
(-3)
A 		31
B 11.6
(1.2)
A 		6.3
(-0.9)
A 		1.6
(-2.7)
A 		16.1
(3)
A 		0.8
(-3)
A 		16.2
(3)
A 		15
C 19
(3)
A 		2
(-2.6)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		13.1
(1)
A 		18
avr 21
(3) 		4.6
(-3) 		6.3
(-2.4) 		15.6
(1) 		6.3
(-2.4) 		10.2
(-1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		2.7
(-0.5)
A 		3.7
(1.1)
A 		4.9
(3)
A 		4
B 6.3
(1.7)
A 		7.9
(3)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		7
C 4.1
(-2)
A 		7
(0.5)
M 		3
(-3)
A 		9.9
(3)
A 		7
avr 3.8
(-0.7) 		5.9
(3) 		2.5
(-3) 		5.1
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6
(1.8)
A 		2
(-1.6)
A 		3.4
(-0.4)
A 		7.5
(3)
A 		5.1
(1)
A 		0.3
(-3)
A 		7
B 4
(0.9)
A 		2.1
(-1.1)
A 		0.4
(-2.9)
A 		4.3
(1.2)
A 		0.3
(-3)
A 		6
(3)
A 		6
C 7.1
(3)
A 		0.6
(-2.7)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		0.4
(-2.8)
A 		4.4
(0.7)
A 		7
avr 5.7
(3) 		1.6
(-2.7) 		1.4
(-3) 		4
(0.6) 		1.9
(-2.3) 		3.6
(0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.819
Sequence Type Exemplar sequence
Representative Public ID C17H1.1 NCBI
Target Description C17H1.1 /REP_DB=WormBase Gene ID /WP=CE15623 /TR=O45252 /GB=CAB07165.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060897 NCBI Caenorhabditis elegans C17H1.1 (C17H1.1) mRNA, complete cds. 11/11 None
C17H1.1 ENSEMBL cdna:known chromosome:CEL140:I:13127164:13128183:-1 gene:C17H1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005614 7/11 Cross Hyb Matching Probes None
GENEFINDER00000005630 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13127094-13128114(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.1
Entrez Gene 182744 Entrez gene
SwissProt O45252 EMBL-EBI
WormBase CE15623 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07165 Hypothetical protein C17H1.1 [Caenorhabditis elegans] ref|NP_493298.1| C17H1.1 [Caenorhabditis elegans] 1.0E-143
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 2.0E-79
blast CAB07170 Hypothetical protein C17H1.6 [Caenorhabditis elegans] ref|NP_493300.1| C17H1.6 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 6.0
Sequence
Target Sequence 
>C. ELEGANS:178530_AT
gcatattttcaaacgtcaaagcgcggaaagaggagaacacccgatttcaagaggagtgtc
ataacgagaagaaacaatttggactgaaagtcttgaagacagcggaagagaacaacgcca
ttgttttgaacgaaacgcagagaaccaatgaaatcaagttgggtaatgaaaaaaatcaaa
tagatcatgattcacgagtttatgagctagaagaaaggagtatggcaacaaagatgtgcg
tcaaccaagaacgggagaaagacagaaaagaagctgttttcattgctgttgtcaagagaa
tgatcagcgctggacgagatgttacaggcaaagtcgactctttggcggatcacacattca
aactaacgaccggaagtggaggatcggatttggaaggcgatattgagctttgtgaggttt
gttgtttcactgataattatttactacggtcccatgcatactcagtcaacgctcggtatg
ttgactgctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATATTTTCAAACGTCAAAGCGCG 489 307 305 Antisense
GAGAACACCCGATTTCAAGAGGAGT 160 391 337 Antisense
GATGTGCGTCAACCAAGAACGGGAG 693 405 537 Antisense
AAGCTGTTTTCATTGCTGTTGTCAA 153 149 575 Antisense
TCAAGAGAATGATCAGCGCTGGACG 227 633 596 Antisense
GATGTTACAGGCAAAGTCGACTCTT 493 409 622 Antisense
GGATCACACATTCAAACTAACGACC 506 511 651 Antisense
GAGGTTTGTTGTTTCACTGATAATT 651 401 718 Antisense
GATAATTATTTACTACGGTCCCATG 644 361 736 Antisense
TGCATACTCAGTCAACGCTCGGTAT 329 579 759 Antisense
AACGCTCGGTATGTTGACTGCTACT 353 145 772 Antisense
Sequence Source Affymetrix Proprietary Database