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[178529_at]

Description ZK856.6 /REP_DB=WormBase Gene ID /WP=CE06663 /TR=Q23641 /GB=CAA94854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 26      6grp_total > 27      4grp_total > 21      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 297.4
(1.5)
P 		195.4
(-0.8)
P 		94.3
(-3)
A 		365.6
(3)
P 		271
B 290.9
(2.4)
P 		220.4
(-0.3)
A 		148.8
(-3)
A 		305.8
(3)
P 		157
C 342.4
(2.8)
P 		158.5
(-2.1)
M 		124.1
(-3)
M 		351.8
(3)
P 		228
avr 310.2
(2.2) 		191.4
(-1.1) 		122.4
(-3) 		341.1
(3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 226.3
(3)
P 		148.6
(-0.4)
P 		162.9
(0.3)
P 		87.6
(-3)
A 		150.6
(-0.3)
P 		154.4
(-0.1)
P 		139
B 207.9
(3)
P 		208.3
(3)
P 		156.1
(-1.1)
P 		131.2
(-3)
P 		138.4
(-2.4)
P 		185.1
(1.2)
P 		77
C 216.7
(2.9)
P 		218.3
(3)
P 		116.9
(-2.1)
P 		98.7
(-3)
P 		116.4
(-2.1)
P 		144.9
(-0.7)
P 		120
avr 217
(3) 		191.7
(1.6) 		145.3
(-0.9) 		105.8
(-3) 		135.1
(-1.4) 		161.5
(0) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 108.3
(3)
P 		42.4
(-1.7)
P 		24.7
(-3)
A 		53.5
(-0.9)
P 		84
B 92.8
(3)
P 		54.4
(-1)
A 		34.5
(-3)
A 		65.2
(0.2)
P 		58
C 113.3
(3)
P 		45.6
(-2.8)
M 		43.2
(-3)
M 		59.3
(-1.6)
P 		70
avr 104.8
(3) 		47.5
(-1.9) 		34.1
(-3) 		59.3
(-0.9) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 41.7
(0.8)
P 		52.8
(3)
P 		35.5
(-0.4)
P 		22.2
(-3)
A 		45.4
(1.5)
P 		37.6
(0)
P 		31
B 72.3
(3)
P 		69.3
(2.5)
P 		37.9
(-2.5)
P 		34.7
(-3)
P 		56.2
(0.4)
P 		69
(2.5)
P 		38
C 80.3
(3)
P 		66.6
(1.6)
P 		29.8
(-2)
P 		19.8
(-3)
P 		37.7
(-1.2)
P 		48.5
(-0.2)
P 		61
avr 64.8
(3) 		62.9
(2.7) 		34.4
(-1.7) 		25.6
(-3) 		46.4
(0.2) 		51.7
(1) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12337
Sequence Type Exemplar sequence
Representative Public ID ZK856.6 NCBI
Target Description ZK856.6 /REP_DB=WormBase Gene ID /WP=CE06663 /TR=Q23641 /GB=CAA94854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073220 NCBI Caenorhabditis elegans ZK856.6 (ZK856.6) mRNA, complete cds. 11/11 None
SNAP00000036948 ENSEMBL cdna:SNAP chromosome:CEL140:V:10201284:10202293:1 11/11 None
GENEFINDER00000036972 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10201284:10202293:1 11/11 None
ZK856.6 ENSEMBL cdna:known chromosome:CEL140:V:10201284:10202293:1 gene:ZK856.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10201283-10202293(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK856.6
Entrez Gene 191442 Entrez gene
SwissProt Q23641 EMBL-EBI
WormBase CE06663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94854 Hypothetical protein ZK856.6 [Caenorhabditis elegans] ref|NP_505621.1| ZK856.6 [Caenorhabditis elegans] 5.0E-99
blast CAE64752 Hypothetical protein CBG09541 [Caenorhabditis briggsae] 2.0E-83
blast AAG38879 Hypothetical protein B0416.2 [Caenorhabditis elegans] ref|NP_509568.1| B0416.2 [Caenorhabditis elegans] sp|Q11070|YT42_CAEEL Hypothetical protein B0416.2 in chromosome X precursor 1.0E-34
Sequence
Target Sequence 
>C. ELEGANS:178529_AT
atggcttcagtcttccaacttatggttctgttcacaattattgcatactgcaaaacatac
gtggtagtcgttgagccgcttgttgaaagtatggatgaggaggcggcggcggcggttgct
ttagaccccgaagtacctgtcgtcgctccctcggatccaattctgctccggaaaagaaag
tcgattctcgtaggactcagtgaaaaaaccgaagaagtttgcaaaacgaaaatacgacaa
catcatcggccgcagtatggacatatcgcaaacggaagtagagtcgagattcaacaagac
gaagaaagctcattggaggctacatttgttgagtgtctaggagaaaaccgaccaccatgc
cacggtgttgatcatgatttattcatttccgaatgtgtaacggtatatgaacataggccc
gcaaatgttagagttgtcaaatcaggtggaccatacttcccagcaactattcgagttcca
attctctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTTCAGTCTTCCAACTTATGG 662 51 13 Antisense
TACGTGGTAGTCGTTGAGCCGCTTG 447 647 70 Antisense
TGCTTTAGACCCCGAAGTACCTGTC 169 471 129 Antisense
CTCGGATCCAATTCTGCTCCGGAAA 225 233 162 Antisense
GTCGATTCTCGTAGGACTCAGTGAA 348 473 192 Antisense
ATACGACAACATCATCGGCCGCAGT 482 23 244 Antisense
TCGGCCGCAGTATGGACATATCGCA 315 607 258 Antisense
CTAGGAGAAAACCGACCACCATGCC 699 221 349 Antisense
AAATCAGGTGGACCATACTTCCCAG 621 115 451 Antisense
CATACTTCCCAGCAACTATTCGAGT 175 213 464 Antisense
ACTATTCGAGTTCCAATTCTCTGTG 652 101 478 Antisense
Sequence Source Affymetrix Proprietary Database