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[178527_at]

Description E01G6.2 /REP_DB=WormBase Gene ID /WP=CE23624 /TR=Q19022 /GB=CAA93532.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 45      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 592.3
(3)
P 		438.1
(-1.3)
P 		375.3
(-3)
P 		391.7
(-2.5)
P 		217
B 588.6
(3)
P 		472.6
(-0.2)
P 		372.7
(-3)
P 		371.1
(-3)
P 		218
C 719.2
(3)
P 		609.9
(1.1)
P 		365.6
(-3)
P 		403.9
(-2.4)
P 		354
avr 633.4
(3) 		506.9
(0.1) 		371.2
(-3) 		388.9
(-2.6) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 448.1
(-0)
P 		590.4
(3)
P 		344.5
(-2.3)
P 		486.1
(0.8)
P 		325.1
(-2.7)
P 		309.8
(-3)
P 		281
B 577.6
(3)
P 		539.9
(2.3)
P 		452.2
(0.7)
P 		443.3
(0.6)
P 		447.4
(0.7)
P 		243.5
(-3)
P 		334
C 598.4
(3)
P 		510.5
(1.2)
P 		426
(-0.6)
P 		449.2
(-0.1)
P 		344
(-2.3)
P 		308.3
(-3)
P 		290
avr 541.4
(2.9) 		546.9
(3) 		407.6
(-0.2) 		459.5
(1) 		372.2
(-1) 		287.2
(-3) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 215.7
(3)
P 		95.1
(-1.6)
P 		98.1
(-1.5)
P 		57.3
(-3)
P 		158
B 187.7
(3)
P 		116.7
(-0.9)
P 		86.4
(-2.6)
P 		79.1
(-3)
P 		109
C 238.1
(3)
P 		175.3
(0.8)
P 		127.4
(-0.9)
P 		68.1
(-3)
P 		170
avr 213.8
(3) 		129
(-0.5) 		104
(-1.5) 		68.2
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 82.6
(-2.7)
P 		210
(3)
P 		75
(-3)
P 		123.3
(-0.9)
P 		98.1
(-2)
P 		75.4
(-3)
P 		135
B 201
(3)
P 		179.7
(1.8)
P 		109.8
(-2)
P 		117.4
(-1.6)
P 		181.8
(2)
P 		90.8
(-3)
P 		110
C 221.8
(3)
P 		155.8
(-0)
P 		108.4
(-2.2)
P 		90.3
(-3)
P 		111.3
(-2)
P 		103.2
(-2.4)
P 		132
avr 168.5
(2.1) 		181.8
(3) 		97.7
(-2.5) 		110.3
(-1.7) 		130.4
(-0.4) 		89.8
(-3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16345
Sequence Type Exemplar sequence
Representative Public ID E01G6.2 NCBI
Target Description E01G6.2 /REP_DB=WormBase Gene ID /WP=CE23624 /TR=Q19022 /GB=CAA93532.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077642 NCBI Caenorhabditis elegans E01G6.2 (E01G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024783 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12256572:12258469:1 11/11 None
E01G6.2 ENSEMBL cdna:known chromosome:CEL140:X:12256565:12258892:1 gene:E01G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024773 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12256571-12258469(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01G6.2
Entrez Gene 181386 Entrez gene
SwissProt Q19022 EMBL-EBI
WormBase CE23624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93532 Hypothetical protein E01G6.2 [Caenorhabditis elegans] ref|NP_510043.1| E01G6.2 [Caenorhabditis elegans] 1.0E-74
blast CAE69910 Hypothetical protein CBG16265 [Caenorhabditis briggsae] 7.0E-69
Sequence
Target Sequence 
>C. ELEGANS:178527_AT
gtttctttcgctatttcgccgaaagaagcgggtcactgaagagatgccccagtcgggagt
gctgtcgccagtcaagaaaaatgacaaagaaagaactggaaaggaaaacaaaggtattgt
gaacagcaatacgatgcctgctgatatggatggaggcaagaagaacaagaagactaaagt
atctaaaaatggaaaggattttggaaagtcaatgtcaatggatgtacttctggaagatga
agctgcagcacttgttgaagcgcttgaaacatttggagacgaaaaaccaactgttgccag
gagtattccaaaacacgccagagttgtcaaaaaagaagacaactcaatgaaaaactgttt
gttcgagaaagaggtatacgacacaatgctcagtgactcattgcgagtttgtgaaatgct
gcaatcccatttagatgattgcatcgtttccgtgcgagcaaaaagtccggagcccacttc
gtcgtactcactggacggccgtgattctggccgtggagcttcttctccatcttccactat
gtcatctaccacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTTTCGCTATTTCGCCGAAAG 85 449 33 Antisense
AAGAGATGCCCCAGTCGGGAGTGCT 507 153 71 Antisense
GGAGTGCTGTCGCCAGTCAAGAAAA 266 517 88 Antisense
GAAGCTGCAGCACTTGTTGAAGCGC 528 343 271 Antisense
AACCAACTGTTGCCAGGAGTATTCC 295 149 317 Antisense
GGAGTATTCCAAAACACGCCAGAGT 687 517 332 Antisense
ACGACACAATGCTCAGTGACTCATT 320 93 410 Antisense
AGATGATTGCATCGTTTCCGTGCGA 600 63 465 Antisense
CACTTCGTCGTACTCACTGGACGGC 701 167 507 Antisense
GGACGGCCGTGATTCTGGCCGTGGA 165 525 525 Antisense
CTTCCACTATGTCATCTACCACAAG 599 217 563 Antisense
Sequence Source Affymetrix Proprietary Database