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[178526_at]

Description T24F1.4 /REP_DB=WormBase Gene ID /WP=CE02364 /TR=Q22745 /GB=CAA90138.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 239
(2.1)
P 		144.4
(-2.9)
A 		142.8
(-3)
A 		257
(3)
A 		114
B 312.3
(3)
P 		165.4
(-2)
A 		135.2
(-3)
A 		263.5
(1.3)
P 		177
C 215.7
(1.6)
P 		118.7
(-2.6)
M 		110
(-3)
A 		247.8
(3)
P 		138
avr 255.7
(3) 		142.8
(-2.4) 		129.3
(-3) 		256.1
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 272.2
(3)
P 		169.9
(-0.6)
P 		195.3
(0.3)
P 		146.5
(-1.4)
A 		224.1
(1.3)
A 		101
(-3)
A 		171
B 170.6
(-0.2)
P 		178.9
(0.1)
P 		255.7
(3)
P 		191.8
(0.6)
P 		184.6
(0.3)
M 		94.8
(-3)
P 		161
C 197.9
(-0.8)
A 		201.8
(-0.6)
P 		212.3
(-0.1)
A 		277.4
(3)
A 		152
(-3)
A 		158.1
(-2.7)
P 		125
avr 213.6
(2.6) 		183.5
(0.8) 		221.1
(3) 		205.2
(2.1) 		186.9
(1) 		118
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 87
(3)
P 		31.3
(-3)
A 		37.3
(-2.4)
A 		37.6
(-2.3)
A 		56
B 99.6
(3)
P 		40.9
(-2.2)
A 		31.3
(-3)
A 		56.1
(-0.8)
P 		68
C 71.4
(3)
P 		34.1
(-3)
M 		38.3
(-2.3)
A 		41.8
(-1.8)
P 		37
avr 86
(3) 		35.4
(-3) 		35.6
(-3) 		45.2
(-1.8) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 50.2
(0.6)
P 		60.4
(2)
P 		42.5
(-0.5)
P 		37.2
(-1.2)
A 		67.6
(3)
A 		24.6
(-3)
A 		43
B 59.4
(0.6)
P 		59.5
(0.7)
P 		62.1
(1.1)
P 		50.8
(-0.7)
P 		75
(3)
M 		35.3
(-3)
P 		40
C 73.4
(3)
A 		61.6
(0.1)
P 		54
(-1.8)
A 		55.8
(-1.4)
A 		49.2
(-3)
A 		52.9
(-2.1)
P 		24
avr 61
(2.3) 		60.5
(2.2) 		52.9
(0.5) 		47.9
(-0.7) 		63.9
(3) 		37.6
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4023
Sequence Type Exemplar sequence
Representative Public ID T24F1.4 NCBI
Target Description T24F1.4 /REP_DB=WormBase Gene ID /WP=CE02364 /TR=Q22745 /GB=CAA90138.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064017 NCBI Caenorhabditis elegans T24F1.4 (T24F1.4) mRNA, complete cds. 11/11 None
SNAP00000017163 ENSEMBL cdna:SNAP chromosome:CEL140:II:11313400:11314171:-1 11/11 None
GENEFINDER00000017168 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11313400:11319583:-1 10/11 None
T24F1.4 ENSEMBL cdna:known chromosome:CEL140:II:11313400:11314171:-1 gene:T24F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11313396-11314168(-) 99.78 100.0
Public Domain and Genome References
Gene Title
Ensembl T24F1.4
Entrez Gene 188867 Entrez gene
SwissProt Q22745 EMBL-EBI
WormBase CE02364 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90138 Hypothetical protein T24F1.4 [Caenorhabditis elegans] ref|NP_496418.1| T24F1.4 [Caenorhabditis elegans] 3.0E-57
blast CAA90138 Hypothetical protein T24F1.4 [Caenorhabditis elegans] ref|NP_496418.1| T24F1.4 [Caenorhabditis elegans] 1.0E-52
blast CAE59533 Hypothetical protein CBG02928 [Caenorhabditis briggsae] 3.0E-46
blast CAE59533 Hypothetical protein CBG02928 [Caenorhabditis briggsae] 6.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496418.1 1 100-122
T24F1.4 1 100-122
SNAP00000017163 1 100-122
GENEFINDER00000017168 1 126-148
Sequence
Target Sequence 
>C. ELEGANS:178526_AT
gcagatcttttccatttcattcggctaagcagacaagaaaacgaagaagaagctcttgag
gaaatggctaactgccctccacactggaccggcgccgcatgtgactggccaatttgtgtg
catggccgggcgaatcccgctacaaaactttgcaattgccacaactattactcgccgccg
ttttgtatttcgtgcttgccaggctattggggtgaatcatgtgaccgtcagcccttgaag
ggagtgacatctgcaagcgattttccaattcgtattcctccaatcttaatcaagccgatc
ctaatcgcaatcgcgatattaattttgctgatggtggtcattttgatttacagagtccgt
atctacatacagagccgaaaaccgcctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGATCTTTTCCATTTCATTCGGC 226 313 28 Antisense
GAGGAAATGGCTAACTGCCCTCCAC 410 405 85 Antisense
CCGCATGTGACTGGCCAATTTGTGT 172 263 122 Antisense
CAATTTGTGTGCATGGCCGGGCGAA 94 181 137 Antisense
GCGAATCCCGCTACAAAACTTTGCA 108 255 157 Antisense
GCAATTGCCACAACTATTACTCGCC 281 323 179 Antisense
TTTGTATTTCGTGCTTGCCAGGCTA 421 665 209 Antisense
TGTGACCGTCAGCCCTTGAAGGGAG 158 555 247 Antisense
AATTCGTATTCCTCCAATCTTAATC 285 173 294 Antisense
AGCCGATCCTAATCGCAATCGCGAT 328 83 320 Antisense
CATACAGAGCCGAAAACCGCCTCGT 164 213 393 Antisense
Sequence Source Affymetrix Proprietary Database