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[178525_at]

Description B0284.3 /REP_DB=WormBase Gene ID /WP=CE00668 /TR=Q17467 /GB=CAA83221.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 12      4grp_total > 20      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 90.7
(-2.8)
A 		160.2
(1.3)
M 		88
(-3)
P 		189.5
(3)
P 		102
B 142
(3)
P 		78.8
(-1.4)
A 		94.3
(-0.3)
P 		55.1
(-3)
A 		87
C 72.3
(-2.1)
A 		73.6
(-2)
A 		60.2
(-3)
A 		138.5
(3)
P 		78
avr 101.7
(-0.3) 		104.2
(-0) 		80.8
(-3) 		127.7
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 140.7
(3)
P 		111.7
(1.3)
P 		121.7
(1.9)
P 		89.1
(-0.1)
M 		116.6
(1.6)
P 		40.8
(-3)
A 		100
B 122.7
(1.1)
P 		147.5
(2.9)
P 		149.4
(3)
P 		141.8
(2.5)
P 		114.1
(0.5)
P 		65.1
(-3)
P 		84
C 100
(-2.4)
A 		177
(3)
P 		90.9
(-3)
A 		117
(-1.2)
A 		93.2
(-2.8)
A 		105.1
(-2)
P 		86
avr 121.1
(1.1) 		145.4
(3) 		120.7
(1) 		116
(0.7) 		108
(0) 		70.3
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 33
(2.1)
A 		34.8
(3)
M 		23
(-3)
P 		27.7
(-0.6)
P 		12
B 45.3
(3)
P 		19.5
(-1.6)
A 		21.9
(-1.2)
P 		11.7
(-3)
A 		34
C 23.9
(3)
A 		21.2
(-2.6)
A 		21
(-3)
A 		23.4
(2)
P 		3
avr 34.1
(3) 		25.2
(-1) 		22
(-2.5) 		20.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 25.9
(0.2)
P 		39.7
(3)
P 		26.5
(0.3)
P 		22.6
(-0.4)
M 		35.2
(2.1)
P 		9.9
(-3)
A 		30
B 42.7
(1.5)
P 		49.1
(3)
P 		36.3
(-0.1)
P 		37.6
(0.2)
P 		46.4
(2.3)
P 		24.3
(-3)
P 		25
C 37.1
(-0.3)
A 		54
(3)
P 		23.1
(-3)
A 		23.5
(-2.9)
A 		30.2
(-1.6)
A 		35.2
(-0.7)
P 		31
avr 35.2
(-0) 		47.6
(3) 		28.6
(-1.7) 		27.9
(-1.8) 		37.3
(0.5) 		23.1
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6059
Sequence Type Exemplar sequence
Representative Public ID B0284.3 NCBI
Target Description B0284.3 /REP_DB=WormBase Gene ID /WP=CE00668 /TR=Q17467 /GB=CAA83221.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065482 NCBI Caenorhabditis elegans B0284.3 (B0284.3) mRNA, complete cds. 11/11 None
B0284.3 ENSEMBL cdna:known chromosome:CEL140:III:4379337:4381010:-1 gene:B0284.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025281 5/11 Cross Hyb Matching Probes None
GENEFINDER00000025286 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4379456-4381010(-) 86.32 100.0
Public Domain and Genome References
Gene Title
Ensembl B0284.3
Entrez Gene 175566 Entrez gene
SwissProt Q17467 EMBL-EBI
WormBase CE28525 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83221 Hypothetical protein B0284.3 [Caenorhabditis elegans] ref|NP_497883.1| B0284.3 [Caenorhabditis elegans] 8.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497883.1 2 20-42,57-79
B0284.3 2 20-42,57-79
Sequence
Target Sequence 
>C. ELEGANS:178525_AT
gacaccagtccgcaaacacagcggcagacaatgcagacagcgttcatacaccattcataa
ttatgcgatatctgctcattgagatctccgtaatttttcgtctctctcgttttcaattaa
cgcattcactttgtttttcaatcgattcatcatttgtttttgccattttttttcgtgaag
ttttcttcatagttgtacttaccatatttggaaacagtattcttgaactttttttttcga
attttttaaccgaaaaaattttgaaaaatttcataacgatattcgttcatttaagcagga
cgacaaaaagttacgaaaatggcgagaccatctgtaaacaatcctcaagctcaagcgagt
gggccgtctgggcgtcgccggtcccgagctcctgtcacccagccaacatctcctccattg
ccaccaagtgtaaaaagagttttccaagtgaaaaaccttccaacgaatgtgtcccagaac
gatatggacgaactattctcctcattcaatccgacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACCAGTCCGCAAACACAGCGGC 211 367 29 Antisense
CAGACAGCGTTCATACACCATTCAT 324 205 62 Antisense
GATATCTGCTCATTGAGATCTCCGT 302 425 95 Antisense
AGATCTCCGTAATTTTTCGTCTCTC 611 65 110 Antisense
ATTAACGCATTCACTTTGTTTTTCA 141 13 144 Antisense
GATTCATCATTTGTTTTTGCCATTT 477 431 172 Antisense
GACCATCTGTAAACAATCCTCAAGC 610 383 354 Antisense
TCAAGCTCAAGCGAGTGGGCCGTCT 587 629 373 Antisense
ACCTTCCAACGAATGTGTCCCAGAA 99 87 483 Antisense
GATATGGACGAACTATTCTCCTCAT 31 425 509 Antisense
ATTCTCCTCATTCAATCCGACAAAA 233 9 523 Antisense
Sequence Source Affymetrix Proprietary Database