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[178523_at]

Description M02B1.4 /REP_DB=WormBase Gene ID /WP=CE12318 /TR=Q93893 /GB=CAB03203.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 13      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 6.1
(-3)
A 		25.2
(-0.8)
A 		7.8
(-2.8)
A 		57.4
(3)
A 		51
B 47.9
(3)
A 		11.7
(-2)
A 		8.6
(-2.4)
A 		4.1
(-3)
A 		44
C 19.2
(-1.8)
A 		20.4
(-1.7)
A 		7.1
(-3)
A 		67
(3)
A 		60
avr 24.4
(-0.2) 		19.1
(-1.1) 		7.8
(-3) 		42.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 12.2
(-2.6)
A 		23.8
(-2.1)
A 		36.4
(-1.5)
A 		3.6
(-3)
A 		109.8
(2)
A 		131.2
(3)
A 		128
B 34
(-2)
A 		14.1
(-2.7)
A 		5.8
(-3)
A 		14.5
(-2.7)
A 		108.8
(0.7)
A 		173.1
(3)
P 		167
C 18.5
(-2.5)
A 		10.2
(-2.8)
A 		11.3
(-2.8)
A 		4.8
(-3)
A 		133.9
(1.7)
A 		170.6
(3)
P 		166
avr 21.6
(-2.4) 		16
(-2.7) 		17.8
(-2.6) 		7.6
(-3) 		117.5
(1.4) 		158.3
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.2
(-2.8)
A 		5.5
(0.3)
A 		2
(-3)
A 		8.4
(3)
A 		6
B 15.3
(3)
A 		2.9
(-2.2)
A 		2
(-2.5)
A 		0.9
(-3)
A 		14
C 6.4
(-0.3)
A 		5.9
(-0.7)
A 		2.5
(-3)
A 		11.3
(3)
A 		9
avr 8
(3) 		4.8
(-0.3) 		2.2
(-3) 		6.9
(1.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 2.2
(-2.8)
A 		8.5
(-1.6)
A 		7.9
(-1.7)
A 		0.9
(-3)
A 		33.1
(3)
A 		31.9
(2.8)
A 		32
B 11.8
(-2)
A 		4.7
(-2.7)
A 		1.4
(-3)
A 		3.8
(-2.8)
A 		44.2
(1.1)
A 		64.6
(3)
P 		63
C 6.9
(-2.4)
A 		3.1
(-2.8)
A 		2.9
(-2.8)
A 		1
(-3)
A 		43.3
(1.5)
A 		57.1
(3)
P 		56
avr 7
(-2.4) 		5.4
(-2.6) 		4.1
(-2.7) 		1.9
(-3) 		40.2
(1.7) 		51.2
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10020
Sequence Type Exemplar sequence
Representative Public ID M02B1.4 NCBI
Target Description M02B1.4 /REP_DB=WormBase Gene ID /WP=CE12318 /TR=Q93893 /GB=CAB03203.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070043 NCBI Caenorhabditis elegans M02B1.4 (M02B1.4) mRNA, complete cds. 11/11 None
SNAP00000031733 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12823893:12829690:-1 11/11 None
GENEFINDER00000031737 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12823843:12825228:-1 11/11 None
M02B1.4 ENSEMBL cdna:known chromosome:CEL140:IV:12823843:12825288:-1 gene:M02B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12823848-12825294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B1.4
Entrez Gene 187395 Entrez gene
SwissProt Q93893 EMBL-EBI
WormBase CE12318 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03203 Hypothetical protein M02B1.4 [Caenorhabditis elegans] ref|NP_502444.1| M02B1.4 [Caenorhabditis elegans] 1.0E-161
blast CAB03203 Hypothetical protein M02B1.4 [Caenorhabditis elegans] ref|NP_502444.1| M02B1.4 [Caenorhabditis elegans] 1.0E-137
blast CAB03203 Hypothetical protein M02B1.4 [Caenorhabditis elegans] ref|NP_502444.1| M02B1.4 [Caenorhabditis elegans] 1.0E-121
blast CAE74556 Hypothetical protein CBG22315 [Caenorhabditis briggsae] 1.0E-117
blast CAE74556 Hypothetical protein CBG22315 [Caenorhabditis briggsae] 1.0E-105
blast CAE74556 Hypothetical protein CBG22315 [Caenorhabditis briggsae] 2.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502444.1 6 87-104,119-141,154-176,208-225,232-254,269-291
M02B1.4 6 87-104,119-141,154-176,208-225,232-254,269-291
SNAP00000031733 6 48-65,80-102,115-137,169-186,193-215,230-252
GENEFINDER00000031737 7 53-75,82-104,119-141,146-163,173-190,197-219,234-256
Sequence
Target Sequence 
>C. ELEGANS:178523_AT
ggctattcttgtctgtacagcccggctcgtcagattttcggaagcttcattgtcttcatg
ttcacttatgtcttccttccactgttgggagctaatattgcatacttgttcaaaaaagac
aaactaacactttatgaatatcgggtgtctatgattgtttgggcgttcttgtgtggaaca
ttctccacaatcagtaatattcattacgcattgtcagactatggagcaccaaattatttt
atgccagttctagtcggactaactgctcacctcattggaaatcgattcgataacaacaga
aaggctcttgtcggtttgagtgtgggaagtgccgttctggtctccttgagcatgcttctc
atgacaagtggactctcaatcggcgcattcttctccctctccgtgtgcagtgtcaacgca
atcgtggctcttcaactaatgatctacgatcttgtgctcgatggacctggagccagtgcg
aatgcatcaatgactcatgtcgtcggtgtcatcatcattatgatcaatttcttgatcgtc
gtccgtctcactggaacctatctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATTCTTGTCTGTACAGCCCGG 190 539 328 Antisense
AGCTTCATTGTCTTCATGTTCACTT 440 79 370 Antisense
TCTTCCTTCCACTGTTGGGAGCTAA 665 615 398 Antisense
ACTAACTGCTCACCTCATTGGAAAT 362 99 585 Antisense
TGACAAGTGGACTCTCAATCGGCGC 636 571 689 Antisense
CTCTCCGTGTGCAGTGTCAACGCAA 166 231 724 Antisense
TCAACGCAATCGTGGCTCTTCAACT 686 629 740 Antisense
TCTACGATCTTGTGCTCGATGGACC 505 613 770 Antisense
GACCTGGAGCCAGTGCGAATGCATC 407 381 791 Antisense
TCATGTCGTCGGTGTCATCATCATT 170 623 822 Antisense
TCCGTCTCACTGGAACCTATCTGGA 139 595 869 Antisense
Sequence Source Affymetrix Proprietary Database