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[178522_at]

Description W09H1.4 /REP_DB=WormBase Gene ID /WP=CE16574 /TR=O45902 /GB=CAB04957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 53      4grp_total > 26      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 64.5
(-3)
P 		71.7
(-2.6)
A 		92.5
(-1.5)
A 		174.6
(3)
P 		110
B 38.9
(-3)
M 		104.7
(3)
P 		72.7
(0.1)
M 		87.9
(1.5)
A 		66
C 61
(-2.6)
P 		98.5
(0.7)
M 		56.1
(-3)
A 		124.6
(3)
P 		69
avr 54.8
(-3) 		91.6
(-0) 		73.8
(-1.5) 		129
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 85.9
(-1.6)
A 		108.4
(0.7)
P 		81.7
(-2.1)
P 		72.8
(-3)
P 		130.9
(3)
P 		117.8
(1.6)
A 		58
B 85.9
(0.5)
P 		84.2
(0.3)
P 		103.1
(3)
P 		86.3
(0.6)
P 		66.7
(-2.2)
P 		61.1
(-3)
P 		42
C 66.5
(-2.5)
P 		64.4
(-2.6)
P 		132.9
(3)
A 		78.4
(-1.5)
M 		84.9
(-0.9)
P 		59.8
(-3)
P 		73
avr 79.4
(-3) 		85.7
(-1.5) 		105.9
(3) 		79.2
(-3) 		94.2
(0.4) 		79.6
(-2.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 23.5
(1.7)
P 		15.6
(-3)
A 		24.2
(2.2)
A 		25.6
(3)
P 		10
B 12.4
(-3)
M 		25.9
(3)
P 		16.8
(-1)
M 		18.7
(-0.2)
A 		14
C 20.2
(-2.5)
P 		28.3
(3)
M 		19.5
(-3)
A 		21
(-2)
P 		9
avr 18.7
(-3) 		23.3
(3) 		20.2
(-1) 		21.8
(1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.8
(-3)
A 		38.5
(2.7)
P 		17.8
(-2.5)
P 		18.5
(-2.3)
P 		39.5
(3)
P 		28.7
(0.3)
A 		24
B 29.9
(3)
P 		28
(1.4)
P 		25
(-1.1)
P 		22.8
(-3)
P 		27.1
(0.6)
P 		22.8
(-3)
P 		7
C 24.7
(-0)
P 		19.7
(-1.7)
P 		33.8
(3)
A 		15.8
(-3)
M 		27.5
(0.9)
P 		20
(-1.6)
P 		18
avr 23.5
(-0.8) 		28.7
(1.7) 		25.5
(0.1) 		19
(-3) 		31.4
(3) 		23.8
(-0.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3655
Sequence Type Exemplar sequence
Representative Public ID W09H1.4 NCBI
Target Description W09H1.4 /REP_DB=WormBase Gene ID /WP=CE16574 /TR=O45902 /GB=CAB04957.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064398 NCBI Caenorhabditis elegans W09H1.4 (W09H1.4) mRNA, complete cds. 11/11 None
W09H1.4 ENSEMBL cdna:known chromosome:CEL140:II:13184992:13185493:1 gene:W09H1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010988 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010991 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13184988-13185490(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09H1.4
Entrez Gene 189328 Entrez gene
SwissProt O45902 EMBL-EBI
WormBase CE16574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04957 Hypothetical protein W09H1.4 [Caenorhabditis elegans] ref|NP_496799.1| W09H1.4 [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:178522_AT
tgcgaccgggatccccggatggttcaaggatgagatcatgccacgtgcgatggaactggc
aaaagtcaaatcgtatactgctcactacgataatcacggagtcttcctcgataccttctc
gatgacaacagatcttatcgaggacgagaaaaagatcaaggatcgcatcatcgactctat
cagagctcagaaaaatagagtgaagcttagggctgtcatgggggacgaagggggacgtcc
ccctcgatttttgagctttttccggcgtcccttttgtagaaagctgaagcaccactatca
aatcgaagcaacattcatcagattaatccaatttcatgttggggctccagtttactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGACCGGGATCCCCGGATGGTTC 299 569 27 Antisense
AGGATGAGATCATGCCACGTGCGAT 693 55 53 Antisense
ATACTGCTCACTACGATAATCACGG 226 23 101 Antisense
TAATCACGGAGTCTTCCTCGATACC 467 633 117 Antisense
CTTCCTCGATACCTTCTCGATGACA 688 219 129 Antisense
GGATCGCATCATCGACTCTATCAGA 13 513 186 Antisense
GAAGCTTAGGGCTGTCATGGGGGAC 376 341 228 Antisense
TCGATTTTTGAGCTTTTTCCGGCGT 181 603 270 Antisense
TCCGGCGTCCCTTTTGTAGAAAGCT 59 593 287 Antisense
GAAGCACCACTATCAAATCGAAGCA 478 341 312 Antisense
TCATGTTGGGGCTCCAGTTTACTAC 531 617 360 Antisense
Sequence Source Affymetrix Proprietary Database