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[178518_at]

Description W04G5.7 /REP_DB=WormBase Gene ID /WP=CE14594 /TR=O18171 /GB=CAB07683.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 3.1
(-3)
A 		4.1
(-2.8)
A 		5.3
(-2.6)
A 		38.7
(3)
A 		36
B 1.4
(-3)
A 		14.3
(3)
A 		2.2
(-2.6)
A 		6.3
(-0.7)
A 		13
C 2
(-3)
A 		4.2
(-2.4)
A 		2.5
(-2.9)
A 		25.1
(3)
A 		23
avr 2.2
(-3) 		7.5
(-1.5) 		3.3
(-2.7) 		23.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.8
(-2.6)
A 		27.3
(3)
A 		1.1
(-3)
A 		3.2
(-2.5)
A 		3.2
(-2.5)
A 		5
(-2.1)
A 		26
B 2.2
(-2.7)
A 		1.4
(-3)
A 		16.2
(3)
A 		4.6
(-1.7)
A 		3.6
(-2.1)
A 		1.5
(-3)
A 		15
C 1.4
(-2.8)
A 		12.1
(0.4)
A 		20.8
(3)
A 		5.7
(-1.5)
A 		0.8
(-3)
A 		3.3
(-2.3)
A 		20
avr 2.1
(-3) 		13.6
(3) 		12.7
(2.5) 		4.5
(-1.7) 		2.5
(-2.8) 		3.3
(-2.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.1
(-2.8)
A 		0.9
(-3)
A 		1.4
(-2.4)
A 		5.7
(3)
A 		5
B 0.4
(-3)
A 		3.5
(3)
A 		0.5
(-2.8)
A 		1.3
(-1.3)
A 		3
C 0.7
(-3)
A 		1.2
(-2.1)
A 		0.9
(-2.7)
A 		4.2
(3)
A 		4
avr 0.7
(-3) 		1.9
(-0.6) 		0.9
(-2.6) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		9.7
(3)
A 		0.2
(-3)
A 		0.8
(-2.6)
A 		1
(-2.5)
A 		1.2
(-2.4)
A 		10
B 0.8
(-2.5)
A 		0.5
(-3)
A 		3.9
(3)
A 		1.2
(-1.8)
A 		1.5
(-1.2)
A 		0.6
(-2.8)
A 		3
C 0.5
(-2.8)
A 		3.7
(1.1)
A 		5.3
(3)
A 		1.1
(-2)
A 		0.3
(-3)
A 		1.1
(-2)
A 		5
avr 0.6
(-3) 		4.6
(3) 		3.1
(0.8) 		1
(-2.4) 		0.9
(-2.6) 		1
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1032
Sequence Type Exemplar sequence
Representative Public ID W04G5.7 NCBI
Target Description W04G5.7 /REP_DB=WormBase Gene ID /WP=CE14594 /TR=O18171 /GB=CAB07683.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060572 NCBI Caenorhabditis elegans W04G5.7 (W04G5.7) mRNA, complete cds. 11/11 None
SNAP00000044257 ENSEMBL cdna:SNAP chromosome:CEL140:I:11660911:11661903:1 11/11 None
W04G5.7 ENSEMBL cdna:known chromosome:CEL140:I:11660911:11661903:1 gene:W04G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11660841-11661834(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G5.7
Entrez Gene 189202 Entrez gene
SwissProt O18171 EMBL-EBI
WormBase CE14594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07683 Hypothetical protein W04G5.7 [Caenorhabditis elegans] ref|NP_492973.1| W04G5.7 [Caenorhabditis elegans] 1.0E-158
blast CAB07684 Hypothetical protein W04G5.8 [Caenorhabditis elegans] ref|NP_492972.1| W04G5.8 [Caenorhabditis elegans] 1.0E-120
blast CAE58174 Hypothetical protein CBG01266 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 5.3E-52
Sequence
Target Sequence 
>C. ELEGANS:178518_AT
aatcgacaaaaaactcactcaactttccgacaaaatgtcatgggagtttgataatctaaa
agcttttatagtcgagaatgaattttacgcggatctggcgcaaaccgcctcgacgttaat
gaaattcatgcaggatacagtcaagtatccatgtaaggatagttatgggattttcagaga
cgtgtcgcagaaatctccaccattgcagtatgcttataaaatgataagtcttttggagca
agagtcaacgaatccgttgaaaatggcaatgaaagccgacccattgagaacttcggaaac
tttcgataagtggagaggtattattgaagcagtgatggcacaatttctattcctcgagac
ctatatcaatggattattctggaataagaacatgtatggcccgaatcgtctgaaggaccg
tatcacgcacctgaaccatttgatggattcatggaggagagaatatgaagattcatattg
ggatactgttgtcgagcgtatggttcatgatattcaagatagatatgagaattctagtaa
tggagagaaatcaaagatgatctgcgaccatctttttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGACAAAAAACTCACTCAACTT 530 167 249 Antisense
ACTCACTCAACTTTCCGACAAAATG 685 99 261 Antisense
GTCGAGAATGAATTTTACGCGGATC 557 473 319 Antisense
TGGGATTTTCAGAGACGTGTCGCAG 603 547 414 Antisense
GTGATGGCACAATTTCTATTCCTCG 408 483 580 Antisense
TTCTATTCCTCGAGACCTATATCAA 277 691 593 Antisense
GAACATGTATGGCCCGAATCGTCTG 297 351 636 Antisense
TGGCCCGAATCGTCTGAAGGACCGT 248 537 645 Antisense
GTCTGAAGGACCGTATCACGCACCT 82 471 656 Antisense
TCACGCACCTGAACCATTTGATGGA 434 625 671 Antisense
GATGATCTGCGACCATCTTTTTGCA 427 411 804 Antisense
Sequence Source Affymetrix Proprietary Database