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[178516_at]

Description C17H1.8 /REP_DB=WormBase Gene ID /WP=CE15630 /TR=O45259 /GB=CAB07172.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 12
(-2.2)
A 		8.7
(-3)
A 		20.6
(-0.1)
A 		33.4
(3)
A 		25
B 21
(-2.4)
A 		19.8
(-2.7)
A 		18.1
(-3)
A 		49.7
(3)
P 		32
C 20.8
(-0.9)
A 		2
(-3)
A 		13.7
(-1.7)
A 		54.5
(3)
P 		53
avr 17.9
(-1.7) 		10.2
(-3) 		17.5
(-1.8) 		45.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 34
(3)
A 		5.3
(-2.4)
A 		20.9
(0.6)
A 		1.9
(-3)
A 		12.4
(-1)
A 		18.3
(0.1)
A 		32
B 33.2
(3)
A 		12.5
(-0.9)
A 		8.5
(-1.6)
A 		4.8
(-2.3)
A 		10.8
(-1.2)
A 		1
(-3)
A 		32
C 2.5
(-2.7)
A 		5.9
(-2.3)
A 		15.8
(-1)
A 		45.5
(3)
A 		0.4
(-3)
A 		1.9
(-2.8)
A 		45
avr 23.2
(3) 		7.9
(-2.7) 		15.1
(-0) 		17.4
(0.8) 		7.9
(-2.7) 		7.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.4
(1.3)
A 		1.9
(-3)
A 		5.4
(3)
A 		4.9
(2.1)
A 		4
B 6.7
(-0.7)
A 		4.9
(-2.3)
A 		4.2
(-3)
A 		10.6
(3)
P 		6
C 6.9
(1.4)
A 		0.6
(-3)
A 		4.8
(-0.1)
A 		9.2
(3)
P 		9
avr 6
(0.7) 		2.5
(-3) 		4.8
(-0.6) 		8.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.3
(3)
A 		1.9
(-1.6)
A 		4.6
(1.2)
A 		0.5
(-3)
A 		3.7
(0.3)
A 		4.5
(1.1)
A 		6
B 11.6
(3)
A 		4.1
(-1)
A 		2.1
(-2.1)
A 		1.3
(-2.5)
A 		4.4
(-0.9)
A 		0.4
(-3)
A 		11
C 0.9
(-2.5)
A 		1.8
(-1.9)
A 		4
(-0.4)
A 		9.1
(3)
A 		0.1
(-3)
A 		0.6
(-2.7)
A 		9
avr 6.3
(3) 		2.6
(-1.9) 		3.6
(-0.6) 		3.6
(-0.6) 		2.7
(-1.8) 		1.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.926
Sequence Type Exemplar sequence
Representative Public ID C17H1.8 NCBI
Target Description C17H1.8 /REP_DB=WormBase Gene ID /WP=CE15630 /TR=O45259 /GB=CAB07172.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060898 NCBI Caenorhabditis elegans C17H1.8 (C17H1.8) mRNA, complete cds. 11/11 None
SNAP00000005616 ENSEMBL cdna:SNAP chromosome:CEL140:I:13132296:13134941:-1 11/11 None
C17H1.8 ENSEMBL cdna:known chromosome:CEL140:I:13132296:13138160:-1 gene:C17H1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005617 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005628 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13132226-13138091(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H1.8
Entrez Gene 182750 Entrez gene
SwissProt O45259 EMBL-EBI
WormBase CE15630 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07172 Hypothetical protein C17H1.8 [Caenorhabditis elegans] ref|NP_493299.1| C17H1.8 [Caenorhabditis elegans] 0.0
blast CAB07172 Hypothetical protein C17H1.8 [Caenorhabditis elegans] ref|NP_493299.1| C17H1.8 [Caenorhabditis elegans] 1.0E-134
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 4.0E-30
blast CAB07168 Hypothetical protein C17H1.4 [Caenorhabditis elegans] ref|NP_493296.1| C17H1.4 [Caenorhabditis elegans] 2.0E-28
blast CAB07365 Hypothetical protein F22G12.1 [Caenorhabditis elegans] ref|NP_493302.1| F22G12.1 [Caenorhabditis elegans] 8.0E-26
blast CAB07365 Hypothetical protein F22G12.1 [Caenorhabditis elegans] ref|NP_493302.1| F22G12.1 [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178516_AT
aaggagatctggcgaaagcagtcagaaatgatattcttgaagaaaaatataatagtactg
tccagcacgtgaagcatatctgggctttaatctcgaaagcggtgacggtggttcacaaat
ccctgagcaatgatgataaacaaacgataagtacaaggaatcgcgagattctcgtgactc
ttgtaaagaataaaatggataatttggaagaagcatcagaaaaagtgtcgaatttcaaag
gatatgatggtatgaaaggcggtgcgaatacaaatgtggtaaaacagattctcaacaaga
tcgttgatgttcgaaatagtttgaacacatttttgagcacattctctgagctggacaaat
caatcacggctttcaaagctttcaaggataggatgaatatgttaaattatgcagtcagca
agctgcgtaacattaaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGATCTGGCGAAAGCAGTCAG 70 161 890 Antisense
AGTACTGTCCAGCACGTGAAGCATA 444 61 943 Antisense
GCATATCTGGGCTTTAATCTCGAAA 32 309 963 Antisense
TCGAAAGCGGTGACGGTGGTTCACA 265 601 982 Antisense
GTGGTTCACAAATCCCTGAGCAATG 234 487 997 Antisense
AGTTTGAACACATTTTTGAGCACAT 578 61 1207 Antisense
TTGAGCACATTCTCTGAGCTGGACA 468 705 1222 Antisense
GCTGGACAAATCAATCACGGCTTTC 659 293 1239 Antisense
ATCACGGCTTTCAAAGCTTTCAAGG 143 27 1252 Antisense
AATTATGCAGTCAGCAAGCTGCGTA 390 175 1294 Antisense
CAGCAAGCTGCGTAACATTAAACTA 297 205 1305 Antisense
Sequence Source Affymetrix Proprietary Database