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[178515_s_at]

Description T14D7.2 /REP_DB=WormBase Gene ID /WP=CE13644 /TR=Q94056 /GB=CAB03365.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 88      6grp_total > 95      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3718
1 2 3 4 range
A 650.2
(-3)
P 		1041
(-2.4)
P 		1193.4
(-2.1)
P 		4354.1
(3)
P 		3704
B 781.5
(-3)
P 		1303
(-2.1)
P 		1294.4
(-2.1)
P 		4366.5
(3)
P 		3585
C 648.4
(-3)
P 		1082.7
(-2.2)
P 		1060.8
(-2.2)
P 		3855.1
(3)
P 		3207
avr 693.4
(-3) 		1142.2
(-2.2) 		1182.9
(-2.2) 		4191.9
(3) 		3499

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1431
1 2 3 4 5 6 range
A 1018.7
(-2.1)
P 		1024.9
(-2.1)
P 		838.9
(-3)
P 		1308.7
(-0.7)
P 		2072.5
(3)
P 		1920
(2.3)
P 		1234
B 1065.6
(-0.6)
P 		972.6
(-1.1)
P 		641.2
(-3)
P 		1688.9
(3)
P 		1594.1
(2.5)
P 		1465.1
(1.7)
P 		1048
C 980.4
(-3)
P 		1045
(-2.5)
P 		1098.9
(-2.1)
P 		1100.4
(-2.1)
P 		1799.8
(3)
P 		1499.8
(0.8)
P 		819
avr 1021.6
(-2) 		1014.2
(-2) 		859.7
(-3) 		1366
(0.2) 		1822.1
(3) 		1628.3
(1.8) 		962
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 236.7
(-2.8)
P 		226
(-3)
P 		312
(-1.7)
P 		637.3
(3)
P 		411
B 249.2
(-3)
P 		321.8
(-2.4)
P 		299.9
(-2.6)
P 		930.5
(3)
P 		681
C 214.6
(-3)
P 		311.3
(-1.7)
P 		369.7
(-0.9)
P 		650
(3)
P 		435
avr 233.5
(-3) 		286.4
(-2.4) 		327.2
(-1.9) 		739.3
(3) 		506

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 187.8
(-2.9)
P 		364.5
(-0.5)
P 		182.7
(-3)
P 		331.9
(-1)
P 		625.4
(3)
P 		467.4
(0.9)
P 		443
B 370.8
(-0.4)
P 		323.7
(-1)
P 		155.7
(-3)
P 		447.3
(0.6)
P 		647.7
(3)
P 		546.3
(1.8)
P 		492
C 363.4
(-0.6)
P 		318.9
(-1.4)
P 		279.7
(-2)
P 		221.3
(-3)
P 		582.4
(3)
P 		502.1
(1.7)
P 		361
avr 307.3
(-1.5) 		335.7
(-1.1) 		206
(-3) 		333.5
(-1.1) 		618.5
(3) 		505.3
(1.4) 		413
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178515_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3674
Sequence Type Exemplar sequence
Representative Public ID T14D7.2 NCBI
Target Description T14D7.2 /REP_DB=WormBase Gene ID /WP=CE13644 /TR=Q94056 /GB=CAB03365.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063485 NCBI Caenorhabditis elegans T14D7.2 (T14D7.2) mRNA, complete cds. 11/11 None
SNAP00000027262 ENSEMBL cdna:SNAP chromosome:CEL140:II:8849134:8852009:-1 11/11 None
GENEFINDER00000027265 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8849134:8852009:-1 11/11 None
T14D7.2 ENSEMBL cdna:known chromosome:CEL140:II:8848759:8852183:-1 gene:T14D7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8849130-8852180(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14D7.2
Entrez Gene 174415 Entrez gene
SwissProt Q94056 EMBL-EBI
WormBase CE13644 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03365 Hypothetical protein T14D7.2 [Caenorhabditis elegans] ref|NP_495886.1| T14D7.2 [Caenorhabditis elegans] 0.0
blast CAE59751 Hypothetical protein CBG03197 [Caenorhabditis briggsae] 0.0
blast XP_799222 PREDICTED: similar to CG14205-PA [Strongylocentrotus purpuratus] 1.0E-48
blast XP_799222 PREDICTED: similar to CG14205-PA [Strongylocentrotus purpuratus] 2.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-5
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-5
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495886.1 10 46-68,298-320,340-362,395-412,448-470,477-499,564-586,608-630,645-667,674-696
T14D7.2 10 46-68,298-320,340-362,395-412,448-470,477-499,564-586,608-630,645-667,674-696
SNAP00000027262 10 177-199,240-262,282-301,322-344,379-401,408-430,495-517,539-561,576-598,605-627
GENEFINDER00000027265 10 177-199,240-262,282-304,337-354,390-412,419-441,506-528,550-572,587-609,616-638
Sequence
Target Sequence 
>C. ELEGANS:178515_S_AT
ggcacttgtgggaatccttttcggtttgtacggtctctacccagctcttcaaggatggga
ttcaattgcctggagagcatatcacttgctctatggagcactccatcgtgacattttctc
aattggtattgcattccttatctacatctgtcatactggaattggtggacctgtcaatgt
cttcctctcctccaatttcttcttaccattggccaacttgagtttctcggcctacttgtt
ccacatgattccagtggtactcacttacatgctcgttcccttcccaatatatttcaatac
tcaaattccactcttcattcattgttttgttcaacttctcattacatatttctttgccat
aatatgcacaatggtcagtgaacttccagctctgaatatcgaaaggttattgcttgcctc
tcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACTTGTGGGAATCCTTTTCGGT 498 535 1722 Antisense
TCTCTACCCAGCTCTTCAAGGATGG 286 613 1755 Antisense
GAGCACTCCATCGTGACATTTTCTC 2 391 1817 Antisense
TATTGCATTCCTTATCTACATCTGT 498 665 1848 Antisense
TTGGTGGACCTGTCAATGTCTTCCT 368 707 1883 Antisense
ATTTCTTCTTACCATTGGCCAACTT 360 15 1916 Antisense
GGCCAACTTGAGTTTCTCGGCCTAC 451 543 1932 Antisense
GTTCCCTTCCCAATATATTTCAATA 41 443 1996 Antisense
TACTCAAATTCCACTCTTCATTCAT 664 645 2019 Antisense
AATGGTCAGTGAACTTCCAGCTCTG 348 163 2091 Antisense
TCGAAAGGTTATTGCTTGCCTCTCC 555 601 2120 Antisense
Sequence Source Affymetrix Proprietary Database