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[178514_at]

Description Y6D1A.1 /REP_DB=WormBase Gene ID /WP=CE21324 /TR=Q9U1S8 /GB=CAB60580.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 9.5
(-2.8)
A 		6.8
(-3)
A 		10.3
(-2.7)
A 		78.3
(3)
A 		72
B 34.1
(0.9)
A 		50.1
(3)
A 		12.8
(-1.9)
A 		4.2
(-3)
A 		46
C 16.1
(-1.6)
A 		59.8
(3)
A 		3.4
(-3)
A 		37.8
(0.7)
A 		56
avr 19.9
(-0.9) 		38.9
(2.8) 		8.8
(-3) 		40.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62.7
(3)
A 		6.1
(-3)
A 		17.4
(-1.8)
A 		51.7
(1.8)
A 		28
(-0.7)
A 		31.3
(-0.3)
A 		57
B 28.8
(0.5)
A 		17.3
(-1.2)
A 		16.4
(-1.3)
A 		33
(1.1)
A 		4.5
(-3)
A 		46.5
(3)
A 		42
C 20.8
(-1.1)
A 		21
(-1.1)
A 		43.5
(2.7)
A 		45.2
(3)
A 		9.9
(-3)
A 		21.1
(-1.1)
A 		35
avr 37.4
(1.8) 		14.8
(-2.9) 		25.8
(-0.6) 		43.3
(3) 		14.1
(-3) 		33
(0.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.5
(-1.8)
A 		1.5
(-3)
A 		2.7
(-2.3)
A 		11.5
(3)
A 		10
B 10.9
(2.2)
A 		12.4
(3)
A 		3
(-1.9)
A 		0.9
(-3)
A 		12
C 5.3
(-1.5)
A 		17.2
(3)
A 		1.2
(-3)
A 		6.4
(-1.1)
A 		16
avr 6.6
(0.2) 		10.4
(3) 		2.3
(-3) 		6.3
(-0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.6
(2.2)
A 		2.2
(-3)
A 		3.8
(-2.1)
A 		13.1
(3)
A 		8.5
(0.5)
A 		7.6
(-0)
A 		11
B 10
(0.2)
A 		5.8
(-1.5)
A 		4
(-2.1)
A 		8.8
(-0.3)
A 		1.8
(-3)
A 		17.3
(3)
A 		16
C 7.7
(0.4)
A 		6.4
(-0.6)
A 		11.1
(3)
A 		9.1
(1.5)
A 		3.2
(-3)
A 		7.1
(-0)
A 		8
avr 9.8
(2.1) 		4.8
(-2.7) 		6.3
(-1.3) 		10.3
(2.6) 		4.5
(-3) 		10.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3209
Sequence Type Exemplar sequence
Representative Public ID Y6D1A.1 NCBI
Target Description Y6D1A.1 /REP_DB=WormBase Gene ID /WP=CE21324 /TR=Q9U1S8 /GB=CAB60580.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064125 NCBI Caenorhabditis elegans Y6D1A.1 (Y6D1A.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000024147 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11820489:11823505:-1 11/11 None
Y6D1A.1 ENSEMBL cdna:known chromosome:CEL140:II:11820489:11823523:-1 gene:Y6D1A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11820485-11823502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6D1A.1
Entrez Gene 174818 Entrez gene
SwissProt Q9U1S8 EMBL-EBI
WormBase CE21324 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60580 Hypothetical protein Y6D1A.1 [Caenorhabditis elegans] ref|NP_496526.1| Y6D1A.1 [Caenorhabditis elegans] 0.0
blast CAE68179 Hypothetical protein CBG13839 [Caenorhabditis briggsae] 8.0E-26
blast CAC15861 Hypothetical protein T27D12.4 [Caenorhabditis elegans] emb|CAC15867.1| Hypothetical protein T27D12.4 [Caenorhabditis elegans] ref|NP_496527.1| Patterned Expression Site family member (pes-5) [Caenorhabditis elegans] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178514_AT
gtagaagctgtgatcgttctccaagtcattcaaaagactcaaattcttacactccaccag
aaagctccttgtcgcaaaactataatagagaggatcaacactcgaacgttctcccagaaa
gaaactttgacagccgacaatctgtagatcagagaagagagcaacctaatcactcaagac
atcaacagcaaggagagcccaaaaaccgcgtcaataacggactttaccgaagaatttctg
aagtgaactttgtgaacgagtttgtcaagcacccatgtgtactctgtggcaatcggcata
cagtagatcaatgctttaaaattattgatgtgaacaaccgaagagaagaattgctcatgg
gtggacgatgcaccagatgtcttggaaaacattcgttcaaaaattgccgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGAAGCTGTGATCGTTCTCCAAG 83 457 1523 Antisense
GATCGTTCTCCAAGTCATTCAAAAG 368 417 1534 Antisense
AAGACTCAAATTCTTACACTCCACC 327 153 1556 Antisense
GAAAGCTCCTTGTCGCAAAACTATA 614 359 1582 Antisense
CACTCGAACGTTCTCCCAGAAAGAA 308 191 1621 Antisense
AAGAAACTTTGACAGCCGACAATCT 337 151 1641 Antisense
AGCAACCTAATCACTCAAGACATCA 168 77 1682 Antisense
GACATCAACAGCAAGGAGAGCCCAA 478 369 1700 Antisense
GAGAGCCCAAAAACCGCGTCAATAA 84 395 1715 Antisense
GAACGAGTTTGTCAAGCACCCATGT 638 347 1776 Antisense
ACATTCGTTCAAAAATTGCCGTCTT 554 101 1911 Antisense
Sequence Source Affymetrix Proprietary Database