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[178513_at]

Description C38D4.7 /REP_DB=WormBase Gene ID /WP=CE00920 /TR=Q18512 /GB=CAA86321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 72.9
(-3)
A 		80.7
(-2.7)
A 		102.1
(-1.9)
M 		237.2
(3)
P 		164
B 39.5
(-1.7)
A 		12.9
(-3)
A 		46.4
(-1.4)
A 		135.6
(3)
P 		123
C 80.4
(-2.3)
A 		82.5
(-2.3)
A 		60.4
(-3)
A 		242.8
(3)
P 		182
avr 64.3
(-2.8) 		58.7
(-3) 		69.6
(-2.6) 		205.2
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 58.5
(-1.7)
A 		28
(-3)
A 		40.2
(-2.5)
A 		66.5
(-1.4)
A 		150.8
(2.2)
P 		169.4
(3)
P 		141
B 47.9
(-3)
A 		68.5
(-1.9)
A 		59.3
(-2.4)
P 		126.7
(1.1)
P 		98.9
(-0.3)
P 		163
(3)
P 		115
C 66.1
(-2.9)
A 		93.2
(-0.9)
P 		65.4
(-3)
A 		74.9
(-2.3)
A 		145.6
(3)
P 		136.1
(2.3)
P 		80
avr 57.5
(-2.9) 		63.2
(-2.5) 		55
(-3) 		89.4
(-1) 		131.8
(1.6) 		156.2
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 26.6
(0.2)
A 		17.5
(-3)
A 		26.7
(0.2)
M 		34.7
(3)
P 		17
B 12.6
(-0.8)
A 		3.2
(-3)
A 		10.7
(-1.2)
A 		28.9
(3)
P 		26
C 26.6
(-1.3)
A 		23.7
(-2.2)
A 		21
(-3)
A 		40.9
(3)
P 		20
avr 21.9
(-0.9) 		14.8
(-3) 		19.5
(-1.6) 		34.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 10.8
(-2.7)
A 		9.9
(-2.8)
A 		8.8
(-3)
A 		16.9
(-1.7)
A 		45.5
(3)
P 		41.3
(2.3)
P 		37
B 16.7
(-2.7)
A 		22.8
(-1.9)
A 		14.4
(-3)
P 		33.6
(-0.5)
P 		40.2
(0.3)
P 		60.8
(3)
P 		46
C 24.5
(-1.2)
A 		28.5
(-0.5)
P 		16.7
(-2.7)
A 		15.1
(-3)
A 		47.1
(3)
P 		45.6
(2.7)
P 		32
avr 17.3
(-2.3) 		20.4
(-1.8) 		13.3
(-3) 		21.9
(-1.6) 		44.3
(2.2) 		49.2
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6727
Sequence Type Exemplar sequence
Representative Public ID C38D4.7 NCBI
Target Description C38D4.7 /REP_DB=WormBase Gene ID /WP=CE00920 /TR=Q18512 /GB=CAA86321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065591 NCBI Caenorhabditis elegans C38D4.7 (C38D4.7) mRNA, complete cds. 11/11 None
SNAP00000018669 ENSEMBL cdna:SNAP chromosome:CEL140:III:4810083:4811111:-1 11/11 None
GENEFINDER00000018672 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4810083:4811111:-1 11/11 None
C38D4.7 ENSEMBL cdna:known chromosome:CEL140:III:4810083:4811111:-1 gene:C38D4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4810082-4811111(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38D4.7
Entrez Gene 183310 Entrez gene
SwissProt Q18512 EMBL-EBI
WormBase CE00920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86321 Hypothetical protein C38D4.7 [Caenorhabditis elegans] ref|NP_497992.1| C38D4.7 [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:178513_AT
cgattgtgcactcactgggtactctggctgctcagtcatccatgtttgggcagttgtgtg
agaagatgctaaaagcccaagaagaagctcgcgccgatcaacgatccattcgcgaagagc
atcgagctgaaagagagaaggccgacgagcggagccagcaaaatatggataagatgatgg
cacttgtccattctctcgtggaacgtgtcgataggagccacgcttcgtcatatgatgtgg
ttggtcaaaagaatccatcgtccagctccctcaaaccagcgaaaagagtcaagtctgccg
ttgttcgtcaatccaatttagccaagcggaccggagcacctgttgatgctgcaaaggagt
tgaaaaagattcgagatgaggaaaacagaaaccatggacgatctgctgaaagagataatg
tgttcatcggtgcagtgctggtggggaaaggatctcagtacgataaggatcttgaaaaat
tcaagagcttccgatgcaggacctgcaatgaagtttcccagacgaaggagcagctcgtgg
atcacttttcaaacaaccacgccggcgaacttggggcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTGTGCACTCACTGGGTACTCT 575 247 239 Antisense
GATGATGGCACTTGTCCATTCTCTC 356 411 411 Antisense
CCATTCTCTCGTGGAACGTGTCGAT 186 269 426 Antisense
ATAGGAGCCACGCTTCGTCATATGA 55 23 449 Antisense
GTCAAAAGAATCCATCGTCCAGCTC 424 463 482 Antisense
AAGAGTCAAGTCTGCCGTTGTTCGT 346 151 522 Antisense
ACCGGAGCACCTGTTGATGCTGCAA 601 87 568 Antisense
TAATGTGTTCATCGGTGCAGTGCTG 384 635 654 Antisense
CAAGAGCTTCCGATGCAGGACCTGC 263 185 720 Antisense
GCAGCTCGTGGATCACTTTTCAAAC 474 313 768 Antisense
CCACGCCGGCGAACTTGGGGCGAGA 418 269 795 Antisense
Sequence Source Affymetrix Proprietary Database