[Home] | [Total List]

[178512_at]

Description C54C8.9 /REP_DB=WormBase Gene ID /WP=CE08971 /TR=O17707 /GB=CAB05463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 2
(-3)
A 		10.3
(-1.3)
A 		4.7
(-2.5)
A 		31.8
(3)
A 		30
B 3.3
(-2.6)
A 		5.6
(-0.6)
A 		2.8
(-3)
A 		9.7
(3)
A 		7
C 18.6
(3)
A 		5
(-1.9)
A 		1.8
(-3)
A 		7.5
(-1)
A 		17
avr 8
(-0.8) 		7
(-1.2) 		3.1
(-3) 		16.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 4.5
(0.3)
A 		1.5
(-3)
A 		2.1
(-2.3)
A 		5.3
(1.2)
A 		5
(0.9)
A 		6.9
(3)
A 		5
B 1.5
(-3)
A 		18.5
(-0.6)
A 		4.5
(-2.6)
A 		8.2
(-2)
A 		4.2
(-2.6)
A 		43.2
(3)
A 		42
C 2
(-3)
A 		17
(-1.4)
A 		4.3
(-2.8)
A 		6.4
(-2.5)
A 		6.1
(-2.6)
A 		57.6
(3)
M 		56
avr 2.7
(-3) 		12.3
(-1.3) 		3.6
(-2.8) 		6.6
(-2.3) 		5.1
(-2.6) 		35.9
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.7
(-3)
A 		2.2
(-0.8)
A 		1.2
(-2.3)
A 		4.7
(3)
A 		4
B 1
(-1.7)
A 		1.4
(-0)
A 		0.7
(-3)
A 		2.1
(3)
A 		1
C 6.1
(3)
A 		1.4
(-2.1)
A 		0.6
(-3)
A 		1.3
(-2.2)
A 		6
avr 2.6
(2.7) 		1.7
(-0.2) 		0.8
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.8
(-1.2)
A 		0.5
(-2.5)
A 		0.4
(-3)
A 		1.4
(1.6)
A 		1.5
(2.1)
A 		1.7
(3)
A 		1
B 0.5
(-3)
A 		6.1
(-0.8)
A 		1.1
(-2.8)
A 		2.2
(-2.3)
A 		1.7
(-2.5)
A 		16.1
(3)
A 		16
C 0.7
(-3)
A 		5.2
(-1.5)
A 		1.1
(-2.9)
A 		1.3
(-2.8)
A 		2
(-2.6)
A 		19.3
(3)
M 		19
avr 0.7
(-3) 		3.9
(-1.4) 		0.9
(-2.9) 		1.6
(-2.5) 		1.7
(-2.5) 		12.4
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.925
Sequence Type Exemplar sequence
Representative Public ID C54C8.9 NCBI
Target Description C54C8.9 /REP_DB=WormBase Gene ID /WP=CE08971 /TR=O17707 /GB=CAB05463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060762 NCBI Caenorhabditis elegans C54C8.9 (C54C8.9) mRNA, complete cds. 11/11 None
SNAP00000034213 ENSEMBL cdna:SNAP chromosome:CEL140:I:12469777:12470016:1 11/11 None
C54C8.9 ENSEMBL cdna:known chromosome:CEL140:I:12469777:12470016:1 gene:C54C8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12469707-12469947(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54C8.9
Entrez Gene 183774 Entrez gene
SwissProt O17707 EMBL-EBI
WormBase CE08971 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05463 Hypothetical protein C54C8.9 [Caenorhabditis elegans] ref|NP_493163.1| C54C8.9 [Caenorhabditis elegans] 4.0E-31
blast CAI79156 Hypothetical protein C54C8.12 [Caenorhabditis elegans] ref|NP_001021061.1| C54C8.12 [Caenorhabditis elegans] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:178512_AT
ttcttcggagtcattgcactggattccccaattccggagttctactccactggaagatca
accagggtcccatcccaccgacaccggatcccaagactcggaaaacgtgaagttccaaac
tttcaagctgacaacgttcctgaggctggaggacgagttcgcagatatgtagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCGGAGTCATTGCACTGGATT 190 691 49 Antisense
TCGGAGTCATTGCACTGGATTCCCC 115 607 53 Antisense
AATTCCGGAGTTCTACTCCACTGGA 346 177 78 Antisense
CCGGAGTTCTACTCCACTGGAAGAT 165 265 82 Antisense
TGGAAGATCAACCAGGGTCCCATCC 266 547 99 Antisense
CGGATCCCAAGACTCGGAAAACGTG 611 239 133 Antisense
ACGTGAAGTTCCAAACTTTCAAGCT 260 93 153 Antisense
AACTTTCAAGCTGACAACGTTCCTG 599 139 166 Antisense
GCTGACAACGTTCCTGAGGCTGGAG 77 295 175 Antisense
GAGGCTGGAGGACGAGTTCGCAGAT 72 407 190 Antisense
AGGACGAGTTCGCAGATATGTAGGA 255 55 198 Antisense
Sequence Source Affymetrix Proprietary Database