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[178511_at]

Description F17A2.6 /REP_DB=WormBase Gene ID /WP=CE15860 /TR=O17821 /GB=CAA92159.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 37.5
(-1.8)
A 		3.8
(-3)
A 		7.5
(-2.9)
A 		170.2
(3)
P 		166
B 64.2
(-0.3)
A 		68.2
(-0.1)
A 		9.8
(-3)
A 		131.9
(3)
P 		122
C 15.4
(-2.8)
A 		8.3
(-3)
A 		48.1
(-1.9)
A 		229.6
(3)
P 		221
avr 39
(-2.3) 		26.8
(-2.8) 		21.8
(-3) 		177.2
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 28.2
(-1.6)
A 		8.7
(-2.9)
A 		97.5
(3)
A 		10
(-2.8)
A 		24.3
(-1.8)
A 		6.8
(-3)
A 		91
B 17.7
(-1.4)
A 		52.8
(3)
A 		4.6
(-3)
A 		9.9
(-2.3)
A 		35.8
(0.9)
A 		6.5
(-2.8)
A 		48
C 14
(-2.2)
A 		69.7
(3)
P 		5.4
(-3)
A 		33.7
(-0.4)
A 		19.6
(-1.7)
A 		30.7
(-0.6)
A 		64
avr 20
(-1.9) 		43.7
(3) 		35.8
(1.4) 		17.9
(-2.3) 		26.6
(-0.5) 		14.7
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 13.7
(0.2)
A 		0.8
(-3)
A 		2
(-2.7)
A 		24.9
(3)
P 		24
B 20.5
(1.2)
A 		16.8
(0.4)
A 		2.3
(-3)
A 		28.1
(3)
P 		26
C 5.1
(-2.6)
A 		2.4
(-3)
A 		16.8
(-0.6)
A 		38.7
(3)
P 		36
avr 13.1
(-1.4) 		6.7
(-3) 		7
(-2.9) 		30.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.2
(-1.9)
A 		3.1
(-2.5)
A 		21.2
(3)
A 		2.5
(-2.7)
A 		7.3
(-1.3)
A 		1.6
(-3)
A 		20
B 6.1
(-1.2)
A 		17.6
(3)
A 		1.1
(-3)
A 		2.6
(-2.5)
A 		14.6
(1.9)
A 		2.4
(-2.5)
A 		17
C 5.2
(-1.9)
A 		21.3
(3)
P 		1.4
(-3)
A 		6.8
(-1.4)
A 		6.3
(-1.5)
A 		10.3
(-0.3)
A 		20
avr 5.5
(-2.1) 		14
(3) 		7.9
(-0.7) 		4
(-3) 		9.4
(0.2) 		4.8
(-2.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16769
Sequence Type Exemplar sequence
Representative Public ID F17A2.6 NCBI
Target Description F17A2.6 /REP_DB=WormBase Gene ID /WP=CE15860 /TR=O17821 /GB=CAA92159.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077662 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-41) (srd-41) mRNA, complete cds. 11/11 None
GENEFINDER00000014141 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12326645:12328286:1 10/11 None
SNAP00000014132 ENSEMBL cdna:SNAP chromosome:CEL140:X:12326870:12328286:1 11/11 None
F17A2.6 ENSEMBL cdna:known chromosome:CEL140:X:12326645:12328286:1 gene:F17A2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12326644-12328286(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-41
Ensembl F17A2.6
Entrez Gene 184602 Entrez gene
SwissProt O17821 EMBL-EBI
WormBase CE15860 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92159 Hypothetical protein F17A2.6 [Caenorhabditis elegans] ref|NP_510063.1| Serpentine Receptor, class D (delta) family member (srd-41) [Caenorhabditis elegans] sp|O17821|SRD41_CAEEL Serpentine receptor class delta-41 (Protein srd-41) 0.0
blast CAA92159 Hypothetical protein F17A2.6 [Caenorhabditis elegans] ref|NP_510063.1| Serpentine Receptor, class D (delta) family member (srd-41) [Caenorhabditis elegans] sp|O17821|SRD41_CAEEL Serpentine receptor class delta-41 (Protein srd-41) 1.0E-140
blast CAE61421 Hypothetical protein CBG05289 [Caenorhabditis briggsae] 9.0E-94
blast CAE61421 Hypothetical protein CBG05289 [Caenorhabditis briggsae] 1.0E-92
blast CAE61422 Hypothetical protein CBG05290 [Caenorhabditis briggsae] 3.0E-82
blast CAE61422 Hypothetical protein CBG05290 [Caenorhabditis briggsae] 6.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510063.1 7 13-35,47-69,89-111,132-154,186-208,240-262,272-294
F17A2.6 7 13-35,47-69,89-111,132-154,186-208,240-262,272-294
GENEFINDER00000014141 7 13-35,47-69,89-111,132-154,186-208,240-262,277-299
SNAP00000014132 5 15-37,57-79,111-133,165-187,197-219
Sequence
Target Sequence 
>C. ELEGANS:178511_AT
gtatccttttaccattagtcacttctgtgacactggaaataattcttataatcacgcaat
ctcttcctaatgaaatacgtgaacgctacaaacttattaatgtcgacgtcaaagatcatt
cggtagtaggaactttgaattttaaagttcttgcaagtcaagttaatgtatgcataatgt
catcgtctgtagttatgttgccaattattgggttaagctctcgaaggaaattactggagc
atattcagaaaacaagtgatagagtgtctcagaccaaaaattcacagaataagatgtttg
tgaagggtgtaatacttcaaacatttcttccattgtgcttctactgccctatatcatcca
tttatttctactgcatagtcacacatgaagaaatcctcttccagcaatatttcatgttct
tgatcccagcatttcctgcattattcgatccttatatcactttgtattttattacaccat
atagaaatcgtgtaaaaatttggctgcgcatgaataaggtgtctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCCTTTTACCATTAGTCACTTC 523 455 422 Antisense
TATAATCACGCAATCTCTTCCTAAT 696 659 468 Antisense
GTCATCGTCTGTAGTTATGTTGCCA 5 467 600 Antisense
AACATTTCTTCCATTGTGCTTCTAC 3 139 741 Antisense
TACTGCCCTATATCATCCATTTATT 467 647 763 Antisense
ATTTCTACTGCATAGTCACACATGA 113 17 785 Antisense
GAAATCCTCTTCCAGCAATATTTCA 415 361 811 Antisense
ATTTCATGTTCTTGATCCCAGCATT 9 17 830 Antisense
AGCATTTCCTGCATTATTCGATCCT 194 79 849 Antisense
ATTCGATCCTTATATCACTTTGTAT 591 9 864 Antisense
GGCTGCGCATGAATAAGGTGTCTCC 43 541 923 Antisense
Sequence Source Affymetrix Proprietary Database