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[178510_at]

Description R03C1.1 /REP_DB=WormBase Gene ID /WP=CE16280 /TR=O17977 /GB=CAB05259.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 69      6grp_highest_nonorm > 91      6grp_total > 89      4grp_total > 50      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 21.3
(-3)
A 		339.2
(3)
P 		332.7
(2.9)
P 		59.3
(-2.3)
A 		318
B 27.5
(-3)
A 		370
(3)
P 		217.2
(0.3)
P 		62.8
(-2.4)
A 		343
C 39
(-2.8)
A 		273.4
(3)
P 		169.7
(0.5)
P 		28.9
(-3)
A 		245
avr 29.3
(-3) 		327.5
(3) 		239.9
(1.2) 		50.3
(-2.6) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 267.4
(1.3)
P 		207
(-0.3)
P 		109.4
(-3)
P 		180.5
(-1.1)
P 		292.3
(2)
P 		329.8
(3)
P 		220
B 183.3
(-0.2)
P 		191.5
(0.4)
P 		143.8
(-3)
P 		181.7
(-0.3)
P 		205.1
(1.4)
P 		227.2
(3)
P 		83
C 165
(-3)
P 		219.7
(1.7)
P 		188.1
(-1)
P 		211.6
(1)
P 		234.2
(3)
P 		176.5
(-2)
P 		69
avr 205.2
(0.6) 		206.1
(0.6) 		147.1
(-3) 		191.3
(-0.3) 		243.9
(3) 		244.5
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 7.8
(-3)
A 		73.6
(2)
P 		87
(3)
P 		8.7
(-2.9)
A 		79
B 8.8
(-3)
A 		91.4
(3)
P 		50.3
(0)
P 		13.4
(-2.7)
A 		83
C 12.9
(-2.3)
A 		78.6
(3)
P 		59.1
(1.4)
P 		4.9
(-3)
A 		74
avr 9.8
(-2.9) 		81.2
(3) 		65.5
(1.7) 		9
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 49.3
(-0.6)
P 		73.6
(1.6)
P 		23.8
(-3)
P 		45.8
(-1)
P 		88.2
(3)
P 		80.3
(2.3)
P 		64
B 63.8
(0.5)
P 		63.7
(0.5)
P 		34.9
(-3)
P 		48.1
(-1.4)
P 		83.3
(2.8)
P 		84.7
(3)
P 		50
C 61.1
(0.3)
P 		67
(1.4)
P 		47.9
(-2)
P 		42.6
(-3)
P 		75.8
(3)
P 		59.1
(-0)
P 		33
avr 58.1
(-0.1) 		68.1
(1.2) 		35.5
(-3) 		45.5
(-1.7) 		82.4
(3) 		74.7
(2) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3807
Sequence Type Exemplar sequence
Representative Public ID R03C1.1 NCBI
Target Description R03C1.1 /REP_DB=WormBase Gene ID /WP=CE16280 /TR=O17977 /GB=CAB05259.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064682(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064682 NCBI Caenorhabditis elegans R03C1.1 (R03C1.1) mRNA, complete cds. 11/11 None
SNAP00000004736 ENSEMBL cdna:SNAP chromosome:CEL140:II:14907489:14910291:-1 11/11 None
GENEFINDER00000004745 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14907489:14910291:-1 11/11 None
R03C1.1 ENSEMBL cdna:known chromosome:CEL140:II:14907489:14910291:-1 gene:R03C1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14908978-14910288(-) 95.48 100.0
Public Domain and Genome References
Gene Title
Ensembl R03C1.1
Entrez Gene 175150 Entrez gene
SwissProt O17977 EMBL-EBI
WormBase CE35358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE73439 Hypothetical protein CBG20883 [Caenorhabditis briggsae] 1.0E-151
blast CAE73439 Hypothetical protein CBG20883 [Caenorhabditis briggsae] 1.0E-141
blast CAB05259 Hypothetical protein R03C1.1 [Caenorhabditis elegans] ref|NP_497083.2| R03C1.1 [Caenorhabditis elegans] 1.0E-127
blast T23867 hypothetical protein R03C1.2 - Caenorhabditis elegans 2.0E-88
blast T23867 hypothetical protein R03C1.2 - Caenorhabditis elegans 3.0E-79
blast CAB05259 Hypothetical protein R03C1.1 [Caenorhabditis elegans] ref|NP_497083.2| R03C1.1 [Caenorhabditis elegans] 4.0E-79
blast CAB05259 Hypothetical protein R03C1.1 [Caenorhabditis elegans] ref|NP_497083.2| R03C1.1 [Caenorhabditis elegans] 9.0E-70
blast CAE73439 Hypothetical protein CBG20883 [Caenorhabditis briggsae] 3.0E-69
Sequence
Target Sequence 
>C. ELEGANS:178510_AT
gtccctgttgattcttgtgtgcatcggagcccttctggtcgagacatttgctgctccaga
cgagccaatcatcgtccgctcgaagcgtcagcaatgccggtgcgtcaagaatcctaatgg
tggactcacgtgcagttgtgcaaagggaccagctgatggctcctcttcttccatcggatc
cggtgtccaatatgatgctccccagtcggctgacattgcaaatcagctcaccgcaatgtc
ccaacaaactaccggaatgagcggagcccgttgtggatgcatccagattgtcatccaagg
agccccacaatacaactgccagtgcggagatcagagtggaaacccggttagtttttggga
tggtctcccaaccaccaccacaatggctccaaccacaagctccaccaccaccactaccac
cacaaccacccaagccccaaccacaacttccactacaactacacaatcgccagtctccta
cccgcaaggaagtaatggggcttgcaactgcattatgatcagtatcaccagcccacaaac
tgctcagtatcagtgccagtgtgctcaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCTGTTGATTCTTGTGTGCATC 36 477 27 Antisense
AGCCCTTCTGGTCGAGACATTTGCT 397 83 54 Antisense
CAATGCCGGTGCGTCAAGAATCCTA 127 183 118 Antisense
GGTGGACTCACGTGCAGTTGTGCAA 121 499 145 Antisense
CAAAGGGACCAGCTGATGGCTCCTC 643 191 167 Antisense
CTTCCATCGGATCCGGTGTCCAATA 521 219 194 Antisense
TCCCCAGTCGGCTGACATTGCAAAT 323 589 225 Antisense
TGAGCGGAGCCCGTTGTGGATGCAT 520 569 284 Antisense
CCAAGGAGCCCCACAATACAACTGC 536 275 321 Antisense
CTACAACTACACAATCGCCAGTCTC 419 227 479 Antisense
GTATCAGTGCCAGTGTGCTCAACCA 86 445 573 Antisense
Sequence Source Affymetrix Proprietary Database