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[178509_at]

Description F22B8.4 /REP_DB=WormBase Gene ID /WP=CE27754 /TR=O45392 /GB=CAB05495.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 25.4
(-1.9)
P 		19.3
(-3)
A 		23.1
(-2.3)
A 		51.8
(3)
A 		33
B 24.5
(0)
A 		35.7
(3)
A 		25.5
(0.3)
A 		13.2
(-3)
A 		23
C 3
(-3)
A 		13.3
(1.1)
A 		7.8
(-1.1)
A 		18.1
(3)
A 		15
avr 17.6
(-3) 		22.8
(0.1) 		18.8
(-2.3) 		27.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 17.4
(-2.3)
A 		20.5
(-2)
A 		70.7
(3)
P 		12.8
(-2.8)
A 		10.5
(-3)
A 		19.7
(-2.1)
A 		60
B 1.8
(-2.8)
A 		17.3
(-0.2)
A 		14.4
(-0.7)
A 		35.8
(3)
A 		0.8
(-3)
A 		27.4
(1.6)
P 		35
C 2.1
(-2.9)
A 		28.8
(1.4)
A 		19.1
(-0.1)
A 		38.4
(3)
A 		17.9
(-0.3)
A 		1.3
(-3)
A 		37
avr 7.1
(-3) 		22.2
(0.3) 		34.7
(3) 		29
(1.8) 		9.7
(-2.4) 		16.1
(-1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.3
(3)
P 		4.2
(-3)
A 		6
(-0.9)
A 		7.6
(1)
A 		5
B 7.8
(2)
A 		8.8
(3)
A 		5.9
(0.1)
A 		2.8
(-3)
A 		6
C 1
(-3)
A 		3.8
(3)
A 		2.7
(0.6)
A 		3.1
(1.5)
A 		3
avr 6
(3) 		5.6
(1.4) 		4.9
(-1.4) 		4.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.2
(-3)
A 		7.3
(-1)
A 		15.4
(3)
P 		3.3
(-3)
A 		3.2
(-3)
A 		4.8
(-2.2)
A 		12
B 0.6
(-2.8)
A 		5.8
(0.3)
A 		3.5
(-1.1)
A 		9.5
(2.6)
A 		0.3
(-3)
A 		10.2
(3)
P 		10
C 0.8
(-2.7)
A 		8.8
(3)
A 		4.9
(0.2)
A 		7.7
(2.2)
A 		5.8
(0.9)
A 		0.4
(-3)
A 		8
avr 1.5
(-3) 		7.3
(2.4) 		7.9
(3) 		6.8
(2) 		3.1
(-1.5) 		5.1
(0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13856
Sequence Type Exemplar sequence
Representative Public ID F22B8.4 NCBI
Target Description F22B8.4 /REP_DB=WormBase Gene ID /WP=CE27754 /TR=O45392 /GB=CAB05495.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074648 NCBI Caenorhabditis elegans F22B8.4 (F22B8.4) mRNA, complete cds. 11/11 None
F22B8.4 ENSEMBL cdna:known chromosome:CEL140:V:16089395:16090800:1 gene:F22B8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002255 8/11 Cross Hyb Matching Probes None
GENEFINDER00000002259 8/11 Cross Hyb Matching Probes None
SNAP00000044317 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16089154-16090800(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B8.4
Entrez Gene 184823 Entrez gene
SwissProt O45392 EMBL-EBI
WormBase CE27754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05495 Hypothetical protein F22B8.4 [Caenorhabditis elegans] ref|NP_507049.1| F22B8.4 [Caenorhabditis elegans] 0.0
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 1.0E-132
blast CAB03854 Hypothetical protein C06B8.2a [Caenorhabditis elegans] emb|CAB03409.4| Hypothetical protein C06B8.2a [Caenorhabditis elegans] ref|NP_506852.2| C06B8.2a [Caenorhabditis elegans] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:178509_AT
atcgtttcaaagcactgattttggcagtgagttttggtttgaaaatggtaacagagttag
ttttgaggaagcgattcgagattatgcaaatgtttggtggattgatgcccatacaaaatg
ggttcatccgaattcattggatgccgtttatggagatctggcagaatgcgccaacgatgt
taactaactcctcaattcaaacatttatcaattcaacgcacagcaattatgcagttctta
caaaaggacttcttgactattttcccacgtttgacacagatgttctgaaaacaaacgaaa
aaggccttcaagtatctgcaatgctggtgtatttggctcgaactccattcactttggaga
tcttgaaatggcatgccctttgcgcactagaagaaaagtgtatgaaccccccgacagcaa
aactgaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGTTTCAAAGCACTGATTTTGGC 45 33 437 Antisense
TTTGGCAGTGAGTTTTGGTTTGAAA 555 663 456 Antisense
GAGTTAGTTTTGAGGAAGCGATTCG 165 205 490 Antisense
ACAAAATGGGTTCATCCGAATTCAT 601 95 549 Antisense
CCGAATTCATTGGATGCCGTTTATG 479 261 564 Antisense
GATGTTAACTAACTCCTCAATTCAA 626 407 612 Antisense
GCAGTTCTTACAAAAGGACTTCTTG 654 311 667 Antisense
TGGAGATCTTGAAATGGCATGCCCT 408 549 791 Antisense
TGAAATGGCATGCCCTTTGCGCACT 209 573 800 Antisense
ATGCCCTTTGCGCACTAGAAGAAAA 582 37 809 Antisense
ACCCCCCGACAGCAAAACTGAAGTG 696 87 842 Antisense
Sequence Source Affymetrix Proprietary Database