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[178508_at]

Description C14A4.9 /REP_DB=WormBase Gene ID /WP=CE02150 /TR=Q17956 /GB=CAA90113.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      6grp_highest_nonorm > 53      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2310
1 2 3 4 range
A 64
(-3)
A 		2360.8
(3)
P 		2141.3
(2.4)
P 		133
(-2.8)
A 		2297
B 51.7
(-3)
A 		1808.5
(3)
P 		1747.8
(2.8)
P 		84.1
(-2.9)
A 		1757
C 50.8
(-3)
A 		2132.2
(2.9)
P 		2154.6
(3)
P 		143.9
(-2.7)
A 		2104
avr 55.5
(-3) 		2100.5
(3) 		2014.6
(2.7) 		120.3
(-2.8) 		2045

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1590
1 2 3 4 5 6 range
A 346.3
(-2.4)
P 		1595.6
(3)
P 		1035.2
(0.6)
P 		1084.5
(0.8)
P 		769.7
(-0.6)
P 		202.2
(-3)
P 		1393
B 281.3
(-3)
P 		1651.2
(3)
P 		830.1
(-0.6)
P 		1001.4
(0.2)
P 		769.7
(-0.9)
P 		354.5
(-2.7)
P 		1370
C 285.7
(-3)
P 		1792.4
(3)
P 		1006.6
(-0.1)
P 		1244.9
(0.8)
P 		625.5
(-1.6)
P 		319.8
(-2.9)
P 		1507
avr 304.4
(-2.9) 		1679.7
(3) 		957.3
(-0.1) 		1110.3
(0.5) 		721.6
(-1.1) 		292.2
(-3) 		1388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 735
1 2 3 4 range
A 23.3
(-3)
A 		512.5
(2.5)
P 		559.8
(3)
P 		19.5
(-3)
A 		540
B 16.5
(-3)
A 		446.7
(3)
P 		405
(2.4)
P 		17.9
(-3)
A 		430
C 16.8
(-3)
A 		613
(1.9)
P 		751
(3)
P 		24.3
(-2.9)
A 		734
avr 18.9
(-3) 		524.1
(2.5) 		571.9
(3) 		20.6
(-3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 63.8
(-2.8)
P 		567.5
(3)
P 		225.5
(-1)
P 		275.1
(-0.4)
P 		232.3
(-0.9)
P 		49.2
(-3)
P 		518
B 97.9
(-3)
P 		549.6
(3)
P 		201.6
(-1.6)
P 		265.2
(-0.8)
P 		312.7
(-0.1)
P 		132.2
(-2.5)
P 		452
C 105.9
(-3)
P 		546.9
(3)
P 		256.2
(-1)
P 		250.4
(-1)
P 		202.4
(-1.7)
P 		107.1
(-3)
P 		441
avr 89.2
(-3) 		554.7
(3) 		227.8
(-1.2) 		263.6
(-0.8) 		249.1
(-0.9) 		96.2
(-2.9) 		466
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3841
Sequence Type Exemplar sequence
Representative Public ID C14A4.9 NCBI
Target Description C14A4.9 /REP_DB=WormBase Gene ID /WP=CE02150 /TR=Q17956 /GB=CAA90113.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063887 NCBI Caenorhabditis elegans C14A4.9 (C14A4.9) mRNA, complete cds. 11/11 None
SNAP00000002490 ENSEMBL cdna:SNAP chromosome:CEL140:II:10599256:10600354:1 11/11 None
GENEFINDER00000002502 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10599256:10600354:1 11/11 None
C14A4.9.2 ENSEMBL cdna:known chromosome:CEL140:II:10599241:10600440:1 gene:C14A4.9 11/11 None
C14A4.9.1 ENSEMBL cdna:known chromosome:CEL140:II:10599248:10600453:1 gene:C14A4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10599252-10600351(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A4.9
Entrez Gene 174637 Entrez gene
SwissProt Q17956 EMBL-EBI
WormBase CE02150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90113 Hypothetical protein C14A4.9 [Caenorhabditis elegans] ref|NP_496288.1| C14A4.9 [Caenorhabditis elegans] 3.0E-72
blast CAE59634 Hypothetical protein CBG03047 [Caenorhabditis briggsae] 2.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178508_AT
tagtcctcttcatttctgcaataactgtctcgaatgcttgtgtaccaacatcaactccaa
ctaccacaactccatgttgctcaatgctctcacaatcgacattacctcgtagaaatccta
ctatcaccacacaacaacaatgctccgttcttcaaagagtttcatccacgtgcccagttg
atggtattgttatttgtgctgctgcacaggagacaaaccccgataatattctcatcgagt
ttatcaattcggcgggagttgttgtgaggtctgcaaatgccgccggatccccagcaacta
ttctctcagttaaggttgtctgtattaatggagtttggaaggttccaacaacatcagctg
gtaccacttatgctgatattgcgactgtttcctgttctcaatccggatccactggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTCCTCTTCATTTCTGCAATAAC 136 655 26 Antisense
AACTGTCTCGAATGCTTGTGTACCA 257 143 48 Antisense
ACTACCACAACTCCATGTTGCTCAA 528 101 85 Antisense
TGTTGCTCAATGCTCTCACAATCGA 191 563 100 Antisense
TCACCACACAACAACAATGCTCCGT 481 625 149 Antisense
TTCAAAGAGTTTCATCCACGTGCCC 584 683 176 Antisense
GGTATTGTTATTTGTGCTGCTGCAC 660 505 208 Antisense
GTTGTGAGGTCTGCAAATGCCGCCG 536 435 286 Antisense
GGTTCCAACAACATCAGCTGGTACC 453 507 366 Antisense
TGATATTGCGACTGTTTCCTGTTCT 588 563 399 Antisense
TGTTCTCAATCCGGATCCACTGGAA 247 563 418 Antisense
Sequence Source Affymetrix Proprietary Database