[Home] | [Total List]

[178507_at]

Description F53F4.4 /REP_DB=WormBase Gene ID /WP=CE10960 /TR=Q20729 /GB=CAB01213.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 63      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.7
(3)
A 		2.8
(-2.6)
A 		11.6
(0.9)
A 		1.8
(-3)
A 		15
B 18
(3)
A 		5
(-3)
A 		14.4
(1.3)
A 		7.9
(-1.7)
A 		13
C 12
(2.9)
A 		12.1
(3)
A 		5.6
(-3)
A 		7.6
(-1.2)
A 		7
avr 15.6
(3) 		6.6
(-2.5) 		10.5
(-0.1) 		5.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1517
1 2 3 4 5 6 range
A 3.8
(-3)
A 		24.4
(-2.9)
A 		125.9
(-2.5)
M 		1520.6
(3)
P 		792.5
(0.1)
P 		8.4
(-3)
A 		1517
B 4.8
(-3)
A 		5.6
(-3)
A 		46.8
(-2.7)
A 		1008.5
(3)
P 		895.3
(2.3)
P 		109.8
(-2.4)
M 		1004
C 25
(-2.9)
A 		3.9
(-3)
A 		69.7
(-2.7)
A 		1147
(3)
P 		882.9
(1.6)
P 		66
(-2.7)
A 		1143
avr 11.2
(-3) 		11.3
(-3) 		80.8
(-2.7) 		1225.4
(3) 		856.9
(1.2) 		61.4
(-2.8) 		1214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.1
(3)
A 		0.6
(-2.7)
A 		3
(-0.2)
A 		0.3
(-3)
A 		6
B 5.7
(3)
A 		1.2
(-3)
A 		3.3
(-0.2)
A 		1.7
(-2.3)
A 		5
C 4
(3)
A 		3.5
(1.9)
A 		1.9
(-1.7)
A 		1.3
(-3)
A 		3
avr 5.3
(3) 		1.8
(-2) 		2.7
(-0.7) 		1.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 0.7
(-3)
A 		8.7
(-2.9)
A 		27.4
(-2.6)
M 		385.7
(3)
P 		239.1
(0.7)
P 		2
(-3)
A 		385
B 1.7
(-3)
A 		1.9
(-3)
A 		11.4
(-2.8)
A 		267.1
(1.4)
P 		363.8
(3)
P 		41
(-2.3)
M 		362
C 9.3
(-2.8)
A 		1.2
(-3)
A 		17.7
(-2.7)
A 		230.7
(1.8)
P 		285.7
(3)
P 		22.1
(-2.6)
A 		285
avr 3.9
(-3) 		3.9
(-3) 		18.8
(-2.7) 		294.5
(3) 		296.2
(3) 		21.7
(-2.6) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13649
Sequence Type Exemplar sequence
Representative Public ID F53F4.4 NCBI
Target Description F53F4.4 /REP_DB=WormBase Gene ID /WP=CE10960 /TR=Q20729 /GB=CAB01213.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073967 NCBI Caenorhabditis elegans F53F4.4 (F53F4.4) mRNA, complete cds. 11/11 None
SNAP00000012436 ENSEMBL cdna:SNAP chromosome:CEL140:V:13596050:13600861:1 11/11 None
GENEFINDER00000012453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13596019:13600573:1 11/11 None
F53F4.4 ENSEMBL cdna:known chromosome:CEL140:V:13597087:13600573:1 gene:F53F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13597086-13600573(+) 99.34 100.0
Public Domain and Genome References
Gene Title
Ensembl F53F4.4
Entrez Gene 186177 Entrez gene
SwissProt Q20729 EMBL-EBI
WormBase CE10960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01213 Hypothetical protein F53F4.4 [Caenorhabditis elegans] ref|NP_506368.1| F53F4.4 [Caenorhabditis elegans] 0.0
blast CAE66283 Hypothetical protein CBG11530 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178507_AT
tggtttcggatgcaagttacttgtagaacaagagattgatgagggctcagatgggagcgg
ggaaagtctagaaggatctggaagtggtgatgttccagaaggttcgagggacaagaagaa
atgggaaaacacacctgggaatttgaccgatgaaactttactcaccgaagaccttgaagt
taaaccgaaaatttgtgaagggattgtcaagactacagctctctcgtgccttgccccgct
tcttcgattatggactggaattaaagaaaaccgaaaagacactgaagtggttgttttccc
aatcttcgaattctcaaaaattgaactcttggaactatgtgatgcatttgcaaattatag
aagttgtattaagtacacagtcacgacagtttgtagaagtgaacctgttataaattttgc
cgaggaacattttggacaagtttgtacatctcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTTCGGATGCAAGTTACTTGTA 178 551 1254 Antisense
AACACACCTGGGAATTTGACCGATG 309 135 1381 Antisense
GAAACTTTACTCACCGAAGACCTTG 325 355 1405 Antisense
GATTGTCAAGACTACAGCTCTCTCG 1 435 1455 Antisense
CCCGCTTCTTCGATTATGGACTGGA 485 261 1488 Antisense
GACACTGAAGTGGTTGTTTTCCCAA 537 367 1531 Antisense
GTTGTTTTCCCAATCTTCGAATTCT 509 435 1543 Antisense
GTATTAAGTACACAGTCACGACAGT 111 453 1619 Antisense
GTGAACCTGTTATAAATTTTGCCGA 423 471 1652 Antisense
ATTTTGCCGAGGAACATTTTGGACA 611 13 1667 Antisense
TGGACAAGTTTGTACATCTCAGCAA 65 549 1686 Antisense
Sequence Source Affymetrix Proprietary Database