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[178506_at]

Description T11A5.3 /REP_DB=WormBase Gene ID /WP=CE06409 /TR=Q22383 /GB=CAA96683.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 17      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 6.8
(-3)
A 		42.7
(0.6)
A 		30.2
(-0.6)
A 		66.4
(3)
A 		60
B 3.8
(-3)
A 		33.2
(-1.1)
A 		24
(-1.7)
A 		96.6
(3)
A 		93
C 14.1
(-3)
A 		47.8
(0.2)
A 		17.8
(-2.6)
A 		76.9
(3)
A 		63
avr 8.2
(-3) 		41.2
(-0.2) 		24
(-1.7) 		80
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 3.4
(-3)
A 		43.2
(0.9)
A 		54.3
(2)
A 		16
(-1.8)
A 		64.1
(3)
A 		59.2
(2.5)
A 		61
B 63.4
(1.5)
A 		27.9
(-2.5)
A 		32.3
(-2)
A 		23.5
(-3)
A 		24.6
(-2.9)
A 		76.6
(3)
P 		53
C 57.1
(3)
A 		53
(2.5)
A 		29.9
(-0.6)
A 		33.9
(-0.1)
A 		12.2
(-3)
A 		48.8
(1.9)
P 		45
avr 41.3
(-0.3) 		41.4
(-0.3) 		38.8
(-0.7) 		24.5
(-3) 		33.6
(-1.5) 		61.5
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.5
(-3)
A 		9.3
(2.7)
A 		7.9
(1.5)
A 		9.7
(3)
A 		7
B 1.2
(-3)
A 		8.2
(-0.8)
A 		5.6
(-1.6)
A 		20.6
(3)
A 		19
C 4.7
(-3)
A 		13.7
(3)
A 		6.2
(-2)
A 		13
(2.5)
A 		9
avr 2.8
(-3) 		10.4
(0.9) 		6.6
(-1) 		14.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.6
(-3)
A 		15.3
(1.7)
A 		11.8
(0.6)
A 		4.1
(-1.9)
A 		19.3
(3)
A 		14.4
(1.4)
A 		19
B 22.1
(1.3)
A 		9.3
(-2.2)
A 		7.8
(-2.6)
A 		6.2
(-3)
A 		10
(-2)
A 		28.6
(3)
P 		22
C 21.2
(3)
A 		16.2
(1.3)
A 		7.6
(-1.7)
A 		6.8
(-2)
A 		3.9
(-3)
A 		16.3
(1.3)
P 		17
avr 14.6
(0.8) 		13.6
(0.4) 		9.1
(-1.6) 		5.7
(-3) 		11.1
(-0.7) 		19.8
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12154
Sequence Type Exemplar sequence
Representative Public ID T11A5.3 NCBI
Target Description T11A5.3 /REP_DB=WormBase Gene ID /WP=CE06409 /TR=Q22383 /GB=CAA96683.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073144(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073144 NCBI Caenorhabditis elegans Serpentine Receptor, class AB (class A-like) family member (srab-18) (srab-18) mRNA, complete cds. 9/11 None
GENEFINDER00000037722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9872469:9874021:-1 11/11 None
T11A5.3 ENSEMBL cdna:known chromosome:CEL140:V:9872469:9874021:-1 gene:T11A5.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9872490-9874021(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srab-18
Ensembl T11A5.3
Entrez Gene 188405 Entrez gene
SwissProt Q22383 EMBL-EBI
WormBase CE34092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96683 Hypothetical protein T11A5.3 [Caenorhabditis elegans] ref|NP_505545.2| Serpentine Receptor, class AB (class A-like) family member (srab-18) [Caenorhabditis elegans] 0.0
blast T24823 hypothetical protein T11A5.4 - Caenorhabditis elegans 1.0E-138
blast T24823 hypothetical protein T11A5.4 - Caenorhabditis elegans 1.0E-135
blast CAA96682 Hypothetical protein T11A5.2 [Caenorhabditis elegans] ref|NP_505544.2| Serpentine Receptor, class AB (class A-like) family member (srab-17) [Caenorhabditis elegans] 1.0E-106
blast CAA96682 Hypothetical protein T11A5.2 [Caenorhabditis elegans] ref|NP_505544.2| Serpentine Receptor, class AB (class A-like) family member (srab-17) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505545.2 7 15-37,58-80,102-124,144-166,186-208,244-266,276-295
T11A5.3 7 15-37,58-80,102-124,144-166,186-208,244-266,276-295
GENEFINDER00000037722 6 21-43,58-77,141-163,183-205,260-282,292-311
Sequence
Target Sequence 
>C. ELEGANS:178506_AT
gtttgctgtaacatcaattccccttgcggttctgtactcaaaaattcaatttgaaggagt
cgttatgtattattgtgtgacagcccaagctagtctaccgtacgtaggtcaaatgagtgc
agttgtcggttttgtgttccaagtgtcagctcgaatatccttccattacctctacaaaca
aaataaagtacgcgtggatgttgcctactctaatgaaaactcttgtactcttcagcacat
tagaaataccggagttcatcattcaacactttcaaatcgttatcaacttgaacaaaatat
cagctcaatcacctgcctcaaaacctttgctggcatttcaactacgtttattgttatata
taatattatctacattgtattaatgttccacgcaaatgatctggagccgtaccagtactt
tgggatattagaatgtaaatttaaaatggtattgcaaaaaatatatataactgtgaattt
cagtaaatttggcatttccctcgtatgctattgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGCTGTAACATCAATTCCCCTT 233 451 465 Antisense
CCCTTGCGGTTCTGTACTCAAAAAT 417 175 485 Antisense
GTGTGACAGCCCAAGCTAGTCTACC 104 487 539 Antisense
GTGCAGTTGTCGGTTTTGTGTTCCA 296 479 581 Antisense
AAGTGTCAGCTCGAATATCCTTCCA 472 159 605 Antisense
TACGCGTGGATGTTGCCTACTCTAA 551 649 653 Antisense
AAACTCTTGTACTCTTCAGCACATT 74 129 681 Antisense
ATACCGGAGTTCATCATTCAACACT 405 23 710 Antisense
GCCTCAAAACCTTTGCTGGCATTTC 547 281 779 Antisense
GATCTGGAGCCGTACCAGTACTTTG 505 417 862 Antisense
CATTTCCCTCGTATGCTATTGTGTC 183 215 957 Antisense
Sequence Source Affymetrix Proprietary Database