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[178504_at]

Description D2045.1 /REP_DB=WormBase Gene ID /WP=CE20627 /TR=Q18987 /GB=CAA84697.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_high_8_8 > 58      6grp_highest_nonorm > 80      6grp_total > 18      4grp_total > 61      6grp_highest_sub > De      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 307.9
(3)
P 		217.3
(-0.9)
P 		235.7
(-0.1)
M 		167.6
(-3)
P 		140
B 220.1
(2)
P 		214.4
(1.6)
P 		232.8
(3)
P 		153.5
(-3)
P 		79
C 260.1
(2.2)
P 		254.1
(2)
P 		279.6
(3)
P 		125
(-3)
P 		155
avr 262.7
(3) 		228.6
(1.2) 		249.4
(2.3) 		148.7
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 554
1 2 3 4 5 6 range
A 359.3
(2.7)
P 		281.8
(0.9)
P 		170.1
(-1.8)
P 		180.4
(-1.6)
P 		122.3
(-3)
P 		370.8
(3)
P 		249
B 286.9
(3)
P 		163.8
(-2.1)
P 		202
(-0.5)
P 		168.3
(-1.9)
P 		141
(-3)
P 		176.2
(-1.6)
P 		146
C 649.9
(3)
P 		165.4
(-2.2)
P 		323.3
(-0.5)
P 		95.5
(-3)
P 		287.1
(-0.9)
P 		114.7
(-2.8)
P 		554
avr 432
(3) 		203.7
(-1.8) 		231.8
(-1.2) 		148.1
(-3) 		183.5
(-2.3) 		220.6
(-1.5) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 112.1
(3)
P 		47.2
(-1.4)
P 		61.6
(-0.5)
M 		24.5
(-3)
P 		88
B 70.2
(3)
P 		52.9
(0.2)
P 		53.9
(0.4)
P 		32.7
(-3)
P 		38
C 86.1
(2.1)
P 		73
(1.1)
P 		97.5
(3)
P 		21.1
(-3)
P 		76
avr 89.5
(3) 		57.7
(-0) 		71
(1.2) 		26.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 66.2
(-0.2)
P 		100.2
(3)
P 		37
(-3)
P 		45.8
(-2.2)
P 		36.9
(-3)
P 		90.3
(2.1)
P 		63
B 99.8
(3)
P 		54.5
(-1.9)
P 		49
(-2.5)
P 		44.6
(-3)
P 		57.3
(-1.6)
P 		65.7
(-0.7)
P 		55
C 240.9
(3)
P 		50.5
(-2.2)
P 		82.3
(-1.3)
P 		19.2
(-3)
P 		92.9
(-1)
P 		38.4
(-2.5)
P 		222
avr 135.6
(3) 		68.4
(-1.1) 		56.1
(-1.8) 		36.5
(-3) 		62.4
(-1.4) 		64.8
(-1.3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7985
Sequence Type Exemplar sequence
Representative Public ID D2045.1 NCBI
Target Description D2045.1 /REP_DB=WormBase Gene ID /WP=CE20627 /TR=Q18987 /GB=CAA84697.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026059(11), NM_001026060(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026059 NCBI Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds. 11/11 None
NM_001026060 NCBI Caenorhabditis elegans human ATX (ataxin) related family member (atx-2) (atx-2) mRNA, complete cds. 11/11 None
GENEFINDER00000022549 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10461270:10467293:1 11/11 None
SNAP00000022539 ENSEMBL cdna:SNAP chromosome:CEL140:III:10464345:10467293:1 11/11 None
D2045.1a ENSEMBL cdna:known chromosome:CEL140:III:10461509:10467931:1 gene:D2045.1 11/11 None
D2045.1b ENSEMBL cdna:known chromosome:CEL140:III:10464337:10467293:1 gene:D2045.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10461265-10467289(+) 97.83 100.0
Public Domain and Genome References
Ensembl D2045.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS78587 ATX-2 [Caenorhabditis elegans] emb|CAA84697.3| Hypothetical protein D2045.1a [Caenorhabditis elegans] ref|NP_001021230.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 0.0
blast CAE71459 Hypothetical protein CBG18377 [Caenorhabditis briggsae] 1.0E-112
blast CAI46560 Hypothetical protein D2045.1b [Caenorhabditis elegans] ref|NP_001021231.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 4.0E-96
blast AAS78587 ATX-2 [Caenorhabditis elegans] emb|CAA84697.3| Hypothetical protein D2045.1a [Caenorhabditis elegans] ref|NP_001021230.1| human ATX (ataxin) related family member (atx-2) [Caenorhabditis elegans] 4.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR009604 EMBL-EBI Ataxin-2, N-terminal 8.0E-10
Pfam IPR009604 EMBL-EBI Ataxin-2, N-terminal 8.0E-10
Sequence
Target Sequence 
>C. ELEGANS:178504_AT
cgcccacaatcacatccgaatagtcagccaacgactccgggaccacgtggcgagttgcca
aagatgagcggtgctccacagaacggaaacatgcaggccgagtcgagcagcaacgctagt
cacagcggatcgacgagctctcagtcgggacaacgaagcggatctccaccaggtgctgtt
cctccaccaccaccaccacagcagcagcatcagcaacaacaacatccaccacatcatgct
cctccacacgtcggagcaccaccaccacagatgatgcagcagcagcagcaacacattcaa
cagtatatgcaagtattctatccgatgataatgccccaacagatgccaatgcaacagaac
caacatcctcaacaaagtcttatgggcgagcgatctgatcaaggattcccgacgtcggga
tactttgactaccgtacaatgccaaactatcagcaacaacaacaacagcaacagcaacaa
atgcaccgccagaattcgcttccacagcagttccaaggcaatcaaggtgtaaatccatct
ggtcaacaatctggtccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCACAATCACATCCGAATAGTC 78 257 2467 Antisense
AACATGCAGGCCGAGTCGAGCAGCA 531 135 2554 Antisense
GTCGAGCAGCAACGCTAGTCACAGC 17 473 2568 Antisense
GGATCGACGAGCTCTCAGTCGGGAC 686 511 2593 Antisense
TATCCGATGATAATGCCCCAACAGA 218 659 2785 Antisense
TGCAACAGAACCAACATCCTCAACA 406 577 2816 Antisense
CTGATCAAGGATTCCCGACGTCGGG 662 237 2861 Antisense
GACTACCGTACAATGCCAAACTATC 487 373 2893 Antisense
AGCAACAAATGCACCGCCAGAATTC 86 77 2939 Antisense
CCAGAATTCGCTTCCACAGCAGTTC 389 273 2955 Antisense
TCTGGTCAACAATCTGGTCCACCAC 329 607 3004 Antisense
Sequence Source Affymetrix Proprietary Database