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[178503_at]

Description W02D9.6 /REP_DB=WormBase Gene ID /WP=CE14464 /TR=Q9XVH0 /GB=CAB03463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 34.2
(-3)
A 		69.6
(0.8)
P 		89.6
(3)
A 		53.9
(-0.9)
A 		55
B 49.7
(0.9)
A 		55.7
(1.6)
A 		67.7
(3)
P 		17.3
(-3)
A 		50
C 38
(-3)
A 		80
(3)
M 		51.4
(-1.1)
P 		76.2
(2.5)
A 		42
avr 40.6
(-3) 		68.4
(2.8) 		69.6
(3) 		49.1
(-1.2) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 65.2
(-2.5)
P 		63.2
(-2.6)
P 		47.1
(-3)
A 		77.1
(-2.2)
A 		112.7
(-1.3)
P 		278.6
(3)
P 		232
B 29.3
(-2.9)
A 		38
(-2.7)
A 		52.4
(-2.3)
P 		26.6
(-3)
A 		199.9
(1.9)
P 		239.1
(3)
P 		213
C 81.1
(-2)
P 		50.7
(-2.9)
P 		46.1
(-3)
A 		45.5
(-3)
A 		193.9
(1.2)
P 		257.9
(3)
P 		212
avr 58.5
(-2.7) 		50.6
(-2.9) 		48.5
(-3) 		49.7
(-3) 		168.8
(0.4) 		258.5
(3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.4
(-1.3)
A 		15.1
(-0.2)
P 		23.4
(3)
A 		7.9
(-3)
A 		16
B 15.9
(3)
A 		13.7
(1.9)
A 		15.7
(2.9)
P 		3.7
(-3)
A 		12
C 12.6
(-3)
A 		23
(3)
M 		17.9
(0.1)
P 		12.8
(-2.9)
A 		10
avr 13.6
(0) 		17.3
(2.1) 		19
(3) 		8.1
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 12
(-2.8)
P 		22.5
(-1.7)
P 		10.3
(-3)
A 		19.5
(-2)
A 		34
(-0.5)
P 		67.8
(3)
P 		58
B 10.2
(-2.8)
A 		12.6
(-2.6)
A 		12.7
(-2.6)
P 		7.1
(-3)
A 		81.2
(2.4)
P 		89.1
(3)
P 		82
C 30.1
(-1.4)
P 		15.5
(-2.5)
P 		11.7
(-2.8)
A 		9.1
(-3)
A 		62.7
(1.2)
P 		86.3
(3)
P 		77
avr 17.4
(-2.5) 		16.9
(-2.5) 		11.6
(-3) 		11.9
(-3) 		59.3
(1.1) 		81.1
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1378
Sequence Type Exemplar sequence
Representative Public ID W02D9.6 NCBI
Target Description W02D9.6 /REP_DB=WormBase Gene ID /WP=CE14464 /TR=Q9XVH0 /GB=CAB03463.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060783 NCBI Caenorhabditis elegans W02D9.6 (W02D9.6) mRNA, complete cds. 11/11 None
SNAP00000003939 ENSEMBL cdna:SNAP chromosome:CEL140:I:12568469:12568823:-1 10/11 None
GENEFINDER00000003946 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12568533:12568793:-1 11/11 None
W02D9.6 ENSEMBL cdna:known chromosome:CEL140:I:12568533:12568793:-1 gene:W02D9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12568463-12568724(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.6
Entrez Gene 189121 Entrez gene
SwissProt Q9XVH0 EMBL-EBI
WormBase CE14464 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03463 Hypothetical protein W02D9.6 [Caenorhabditis elegans] ref|NP_493184.1| W02D9.6 [Caenorhabditis elegans] 3.0E-48
blast CAB03463 Hypothetical protein W02D9.6 [Caenorhabditis elegans] ref|NP_493184.1| W02D9.6 [Caenorhabditis elegans] 4.0E-40
Sequence
Target Sequence 
>C. ELEGANS:178503_AT
ttccgagagaccctcgaaggctccggcaatccacaggacgaatttgaaaaactcgaattc
gaggaagcctattggccagagctttatacaacccggggacctgaggacgacgaaatctat
cagccgttcatcggaccatgggactatgaaaccgacctcccagaacttcatgaaacacag
gggccggaagacaacgaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGAGAGACCCTCGAAGGCTCCG 407 689 40 Antisense
CTCCGGCAATCCACAGGACGAATTT 216 233 60 Antisense
GAGGAAGCCTATTGGCCAGAGCTTT 396 405 100 Antisense
GCCAGAGCTTTATACAACCCGGGGA 98 271 114 Antisense
TATACAACCCGGGGACCTGAGGACG 566 625 124 Antisense
GACGACGAAATCTATCAGCCGTTCA 623 377 145 Antisense
CAGCCGTTCATCGGACCATGGGACT 290 203 160 Antisense
CCATGGGACTATGAAACCGACCTCC 101 271 175 Antisense
CGACCTCCCAGAACTTCATGAAACA 362 251 192 Antisense
GAACTTCATGAAACACAGGGGCCGG 549 349 202 Antisense
CACAGGGGCCGGAAGACAACGAGGT 117 197 215 Antisense
Sequence Source Affymetrix Proprietary Database