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[178502_at]

Description C14A4.6 /REP_DB=WormBase Gene ID /WP=CE02147 /TR=Q17953 /GB=CAA90110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 43      6grp_total > 30      4grp_total > 18      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 1207.2
(-2.7)
P 		1278.7
(-1.7)
P 		1186.8
(-3)
P 		1608.1
(3)
P 		421
B 1114.5
(-3)
P 		1280.2
(3)
P 		1216.9
(0.7)
P 		1215.5
(0.7)
P 		166
C 1248.4
(3)
P 		1225.6
(1.3)
P 		1168.1
(-3)
P 		1191.6
(-1.2)
P 		80
avr 1190
(-3) 		1261.5
(-0.1) 		1190.6
(-3) 		1338.4
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1463
1 2 3 4 5 6 range
A 781.4
(-2.7)
P 		1162.6
(-0.7)
P 		1899.2
(3)
P 		1274.8
(-0.2)
P 		952.3
(-1.8)
P 		718.5
(-3)
P 		1181
B 1095.5
(-2.2)
P 		1546.2
(-0)
P 		2181.6
(3)
P 		1266.5
(-1.4)
P 		1052.2
(-2.4)
P 		921.9
(-3)
P 		1260
C 982.4
(-1.7)
P 		1567.2
(2.3)
P 		1103.8
(-0.9)
P 		1667.8
(3)
P 		797.3
(-3)
P 		968
(-1.8)
P 		871
avr 953.1
(-2.4) 		1425.3
(0.9) 		1728.2
(3) 		1403
(0.7) 		933.9
(-2.6) 		869.5
(-3) 		859
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 439.6
(3)
P 		277.6
(-1.8)
P 		310.2
(-0.8)
P 		235.4
(-3)
P 		204
B 355.4
(3)
P 		316.2
(0.6)
P 		282
(-1.6)
P 		259
(-3)
P 		96
C 413.3
(3)
P 		352.4
(1.3)
P 		407.1
(2.8)
P 		200.9
(-3)
P 		212
avr 402.8
(3) 		315.4
(-0.1) 		333.1
(0.6) 		231.8
(-3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 144
(-3)
P 		413.5
(3)
P 		413.6
(3)
P 		323.3
(1)
P 		287.4
(0.2)
P 		174.9
(-2.3)
P 		270
B 381.2
(-1.6)
P 		514.7
(2.5)
P 		529.8
(3)
P 		335.5
(-3)
P 		427.5
(-0.2)
P 		343.8
(-2.7)
P 		194
C 364.1
(-0.1)
P 		478.2
(3)
P 		280.9
(-2.4)
P 		335.4
(-0.9)
P 		258
(-3)
P 		324.1
(-1.2)
P 		220
avr 296.4
(-2.5) 		468.8
(3) 		408.1
(1.1) 		331.4
(-1.4) 		324.3
(-1.6) 		280.9
(-3) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3147
Sequence Type Exemplar sequence
Representative Public ID C14A4.6 NCBI
Target Description C14A4.6 /REP_DB=WormBase Gene ID /WP=CE02147 /TR=Q17953 /GB=CAA90110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063884 NCBI Caenorhabditis elegans C14A4.6 (C14A4.6) mRNA, complete cds. 11/11 None
SNAP00000002486 ENSEMBL cdna:SNAP chromosome:CEL140:II:10584414:10594667:-1 10/11 None
GENEFINDER00000002496 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10593562:10594667:-1 11/11 None
C14A4.6.2 ENSEMBL cdna:known chromosome:CEL140:II:10593443:10594689:-1 gene:C14A4.6 11/11 None
C14A4.6.1 ENSEMBL cdna:known chromosome:CEL140:II:10593450:10594687:-1 gene:C14A4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10593558-10594664(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A4.6
Entrez Gene 182581 Entrez gene
SwissProt Q17953 EMBL-EBI
WormBase CE02147 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90110 Hypothetical protein C14A4.6 [Caenorhabditis elegans] ref|NP_496285.1| C14A4.6 [Caenorhabditis elegans] 2.0E-75
blast CAE59644 Hypothetical protein CBG03058 [Caenorhabditis briggsae] 1.0E-68
blast CAA90110 Hypothetical protein C14A4.6 [Caenorhabditis elegans] ref|NP_496285.1| C14A4.6 [Caenorhabditis elegans] 3.0E-66
blast CAE59644 Hypothetical protein CBG03058 [Caenorhabditis briggsae] 2.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496285.1 4 13-35,40-62,74-96,111-133
C14A4.6.2 4 13-35,40-62,74-96,111-133
C14A4.6.1 4 13-35,40-62,74-96,111-133
SNAP00000002486 4 13-35,40-62,74-96,111-133
GENEFINDER00000002496 4 13-35,40-62,74-96,111-133
Sequence
Target Sequence 
>C. ELEGANS:178502_AT
aagaaaatcccagaactcgtcaagattttgtcattgctgggatctttgacactactcatc
taccttggaaccatcaagttccgaccaccaggaatgtcagtaatttggttcacaattgga
tgctccatcgtcttcgatatttgcacaattgcagtacttctcaaggagtacgatatctca
ataatggcgattcgaatgctaccgtatgcagcaattgaatgtattggatcgattcttgca
attatttgctatgttatctccatggcaatatcgattagtagtgaagaagtgactgatgat
ttcggatttttggtggtcgcaattttttgttttattattgcactcatccacgtgttcaat
ctggttgtaaatgttcgaagatggaataatggatcacatcatttgaatccggctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAAATCCCAGAACTCGTCAAGA 463 151 37 Antisense
ATTGCTGGGATCTTTGACACTACTC 267 7 69 Antisense
CCATCAAGTTCCGACCACCAGGAAT 197 271 107 Antisense
GCTCCATCGTCTTCGATATTTGCAC 29 299 158 Antisense
GCACAATTGCAGTACTTCTCAAGGA 569 315 179 Antisense
ATGGCGATTCGAATGCTACCGTATG 699 49 220 Antisense
GCTATGTTATCTCCATGGCAATATC 200 303 284 Antisense
GATTTCGGATTTTTGGTGGTCGCAA 586 425 334 Antisense
GTTTTATTATTGCACTCATCCACGT 291 449 365 Antisense
TCATCCACGTGTTCAATCTGGTTGT 593 621 380 Antisense
GATCACATCATTTGAATCCGGCTGG 189 421 428 Antisense
Sequence Source Affymetrix Proprietary Database