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[178501_at]

Description ZK228.7 /REP_DB=WormBase Gene ID /WP=CE16716 /TR=O46012 /GB=CAB04998.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 43      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.6
(-2.5)
A 		20.6
(3)
A 		16.2
(-3)
A 		17.6
(-1.1)
A 		4
B 18.3
(-1.6)
A 		33.8
(3)
A 		15.9
(-2.3)
A 		13.7
(-3)
A 		20
C 20.9
(-0.3)
A 		34.9
(3)
A 		9.2
(-3)
A 		16.6
(-1.3)
A 		26
avr 18.6
(-1.2) 		29.8
(3) 		13.8
(-3) 		16
(-2.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13
(-0.1)
A 		16.7
(3)
A 		9.5
(-3)
A 		11
(-1.8)
A 		9.5
(-3)
A 		12.6
(-0.4)
A 		7
B 16.2
(-1.5)
A 		34
(3)
A 		17.3
(-1.3)
A 		15.9
(-1.6)
A 		10.5
(-3)
A 		11.2
(-2.8)
A 		24
C 13.6
(-2.3)
A 		44.3
(3)
A 		12.7
(-2.5)
A 		14.4
(-2.2)
A 		10.1
(-2.9)
A 		9.8
(-3)
A 		35
avr 14.3
(-1.8) 		31.7
(3) 		13.2
(-2.1) 		13.8
(-1.9) 		10
(-3) 		11.2
(-2.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6
(3)
A 		4.5
(0.4)
A 		4.2
(-0.2)
A 		2.6
(-3)
A 		3
B 5.8
(0.2)
A 		8.3
(3)
A 		3.7
(-2.1)
A 		2.9
(-3)
A 		5
C 6.9
(0.4)
A 		10
(3)
A 		3.2
(-2.7)
A 		2.8
(-3)
A 		7
avr 6.2
(1.3) 		7.6
(3) 		3.7
(-1.9) 		2.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.4
(-2.5)
A 		5.9
(3)
A 		2.1
(-3)
A 		2.8
(-1.9)
A 		2.9
(-1.7)
A 		3.1
(-1.4)
A 		4
B 5.6
(-1.8)
A 		11.3
(3)
A 		4.2
(-3)
A 		4.2
(-3)
A 		4.3
(-2.9)
A 		4.2
(-3)
A 		7
C 5
(-1.8)
A 		13.5
(3)
A 		3.2
(-2.8)
A 		2.9
(-3)
A 		3.3
(-2.8)
A 		3.3
(-2.8)
A 		11
avr 4.3
(-2.1) 		10.2
(3) 		3.2
(-3) 		3.3
(-2.9) 		3.5
(-2.7) 		3.5
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13729
Sequence Type Exemplar sequence
Representative Public ID ZK228.7 NCBI
Target Description ZK228.7 /REP_DB=WormBase Gene ID /WP=CE16716 /TR=O46012 /GB=CAB04998.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075217 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-179) (srh-179) mRNA, complete cds. 11/11 None
SNAP00000029501 ENSEMBL cdna:SNAP chromosome:CEL140:V:18478964:18480635:1 10/11 None
GENEFINDER00000029505 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18478964:18480686:1 11/11 None
ZK228.7 ENSEMBL cdna:known chromosome:CEL140:V:18478964:18480635:1 gene:ZK228.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18478963-18480635(+) 99.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-179
Ensembl ZK228.7
Entrez Gene 191254 Entrez gene
SwissProt O46012 EMBL-EBI
WormBase CE16716 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 1.0E-180
blast CAB04999 Hypothetical protein ZK228.8 [Caenorhabditis elegans] emb|CAA16412.1| Hypothetical protein ZK228.8 [Caenorhabditis elegans] ref|NP_507619.1| Serpentine Receptor, class H family member (srh-178) [Caenorhabditis elegans] 1.0E-115
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-100
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 8.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.6E-100
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.0E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507618.1 7 17-39,52-74,94-116,135-157,198-220,241-263,273-295
ZK228.7 7 17-39,52-74,94-116,135-157,198-220,241-263,273-295
SNAP00000029501 7 17-39,52-74,94-116,135-157,350-372,393-415,425-447
GENEFINDER00000029505 7 17-39,52-74,94-116,135-157,198-220,241-263,273-295
Sequence
Target Sequence 
>C. ELEGANS:178501_AT
tgctctgagttacgtgatgcctacatatgttagtgctccggatcaggacatcgggaagat
ttggatgaagcagaatgtcccatgtctcccggaagaagtcctccatcgccccggatactt
tgtcatcgccaccgacaacaccatccccaagacgtgcctagccttcatgctaaccctagt
catgtcccaagtgttcttctacgtcggagccatcttctggcacctattccacactatttc
aatctccgccgccacaaatcgcctgcaaaagcaatttttcctggccatctgcattcaggt
gtttattccattactgttattgacccttccgtcattgtatattgtgttggcaatttggtt
ggagtactataatcaaacaaccacaaacctagctgtaacaatgatcccgctacacggagt
gctatcaacaattaccatgctcatggtgcatgctccttatcgccaggccacaattgatac
tttttgcgggagctccaccacgaaaagtaactctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTGAGTTACGTGATGCCTACA 275 581 444 Antisense
GTTAGTGCTCCGGATCAGGACATCG 85 445 472 Antisense
TGAAGCAGAATGTCCCATGTCTCCC 273 575 509 Antisense
TGGCACCTATTCCACACTATTTCAA 69 547 661 Antisense
AAAGCAATTTTTCCTGGCCATCTGC 632 123 711 Antisense
TTCCATTACTGTTATTGACCCTTCC 554 695 749 Antisense
GACCCTTCCGTCATTGTATATTGTG 677 381 765 Antisense
GATCCCGCTACACGGAGTGCTATCA 299 417 846 Antisense
CTCCTTATCGCCAGGCCACAATTGA 275 235 896 Antisense
TTGATACTTTTTGCGGGAGCTCCAC 389 703 917 Antisense
GCTCCACCACGAAAAGTAACTCTCC 90 295 935 Antisense
Sequence Source Affymetrix Proprietary Database