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[178500_at]

Description ZC482.2 /REP_DB=WormBase Gene ID /WP=CE26644 /TR=O18273 /GB=CAB07716.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 26.9
(-0.6)
A 		45.6
(1.3)
A 		3.3
(-3)
A 		62.9
(3)
A 		60
B 30.4
(3)
P 		4.3
(-3)
A 		28.2
(2.5)
A 		7.4
(-2.3)
A 		26
C 33.8
(-3)
P 		37.4
(-1.3)
M 		40.9
(0.4)
A 		46.5
(3)
P 		13
avr 30.4
(-0.4) 		29.1
(-1) 		24.1
(-3) 		38.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 43.3
(3)
A 		4.1
(-2.7)
A 		34.9
(1.8)
P 		10.4
(-1.8)
A 		2
(-3)
A 		3.6
(-2.8)
A 		41
B 34.2
(3)
A 		32.4
(2.6)
M 		19.5
(0.1)
A 		3.7
(-3)
A 		18.4
(-0.1)
A 		19.4
(0.1)
A 		31
C 12.1
(-1.2)
A 		31.8
(3)
A 		3.9
(-3)
A 		4.7
(-2.8)
A 		31.6
(3)
A 		3.8
(-3)
A 		28
avr 29.9
(3) 		22.8
(1.2) 		19.4
(0.3) 		6.3
(-3) 		17.3
(-0.2) 		8.9
(-2.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.8
(2.9)
A 		9.9
(3)
A 		0.9
(-3)
A 		9.2
(2.5)
A 		9
B 9.7
(3)
P 		1.1
(-3)
A 		6.5
(0.8)
A 		1.6
(-2.7)
A 		9
C 11.2
(0.2)
P 		10.8
(-0.2)
M 		14.2
(3)
A 		7.8
(-3)
P 		6
avr 10.2
(3) 		7.3
(-1.4) 		7.2
(-1.5) 		6.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8
(3)
A 		1.4
(-2.4)
A 		7.6
(2.7)
P 		2.6
(-1.4)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		7
B 11.9
(3)
A 		10.8
(2.4)
M 		4.7
(-1)
A 		1
(-3)
A 		7.5
(0.6)
A 		7.2
(0.4)
A 		11
C 4.5
(-0.7)
A 		9.7
(2.7)
A 		1
(-2.9)
A 		0.9
(-3)
A 		10.2
(3)
A 		1.3
(-2.7)
A 		9
avr 8.1
(3) 		7.3
(2.3) 		4.4
(-0.4) 		1.5
(-3) 		6.1
(1.2) 		3.1
(-1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6044
Sequence Type Exemplar sequence
Representative Public ID ZC482.2 NCBI
Target Description ZC482.2 /REP_DB=WormBase Gene ID /WP=CE26644 /TR=O18273 /GB=CAB07716.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067255 NCBI Caenorhabditis elegans ZC482.2 (ZC482.2) mRNA, complete cds. 11/11 None
SNAP00000006169 ENSEMBL cdna:SNAP chromosome:CEL140:III:12706431:12749876:-1 9/11 None
GENEFINDER00000006285 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12747259:12750291:-1 10/11 None
ZC482.2 ENSEMBL cdna:known chromosome:CEL140:III:12747772:12750800:-1 gene:ZC482.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12747767-12750796(-) 99.02 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC482.2
Entrez Gene 191184 Entrez gene
SwissProt Q9NEK9 EMBL-EBI
WormBase CE26644 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35854 Hypothetical protein ZC482.2 [Caenorhabditis elegans] emb|CAB07716.2| Hypothetical protein ZC482.2 [Caenorhabditis elegans] ref|NP_499656.1| ZC482.2 [Caenorhabditis elegans] 0.0
blast CAB07717 Hypothetical protein ZC482.3 [Caenorhabditis elegans] ref|NP_499659.1| ZC482.3 [Caenorhabditis elegans] 1.0E-161
blast CAB07717 Hypothetical protein ZC482.3 [Caenorhabditis elegans] ref|NP_499659.1| ZC482.3 [Caenorhabditis elegans] 1.0E-117
blast CAB07717 Hypothetical protein ZC482.3 [Caenorhabditis elegans] ref|NP_499659.1| ZC482.3 [Caenorhabditis elegans] 1.0E-101
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 4.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.6E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 6.3E-8
Sequence
Target Sequence 
>C. ELEGANS:178500_AT
atagttgccctattgaaccttggaatttctactgaaaacattgaagcgaaactttgcaaa
gatcctggtccattggatgcgtcattttattgcacatttgaatcaatgagcaaactatca
gatacatgtatgtatatccttggagatctattaatagaccatgaagatgaaaaatatgtt
tccaaattaggagtgttacaatttttattcggaacattgactatcagaaacacaaatctc
accgatttgaattttctcgatcaaatgacttatattggtgcattgaatggtaacgtaaca
tattttccagtcattcaaatatattcgaatccaaatctaagaaacgttggattaaatggg
attatgaacataattacaaaaggaaatcgaactgcaatcatccaagataaccatcccgat
ttattcaagtcaacgccttgccaactatttggagcatattttagtaaccctgcaatggag
aatcgagtgaatttgacatacattggaagtaactgcggtgaaagagttcatataacatca
tcccagtctggacgaatatcgattggcttgtcattcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGTTGCCCTATTGAACCTTGGAA 70 19 1036 Antisense
GATCCTGGTCCATTGGATGCGTCAT 278 417 1096 Antisense
GGATGCGTCATTTTATTGCACATTT 567 513 1110 Antisense
CTCACCGATTTGAATTTTCTCGATC 93 229 1273 Antisense
ACGTAACATATTTTCCAGTCATTCA 354 95 1328 Antisense
ATCATCCAAGATAACCATCCCGATT 89 31 1432 Antisense
CATCCCGATTTATTCAAGTCAACGC 192 211 1447 Antisense
CAAGTCAACGCCTTGCCAACTATTT 212 183 1461 Antisense
GAGCATATTTTAGTAACCCTGCAAT 416 389 1487 Antisense
GTTCATATAACATCATCCCAGTCTG 284 445 1561 Antisense
ATATCGATTGGCTTGTCATTCAGTT 94 21 1591 Antisense
Sequence Source Affymetrix Proprietary Database