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[178499_at]

Description R193.1 /REP_DB=WormBase Gene ID /WP=CE21131 /TR=Q9N5F4 /GB=AAF39954.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 16
(-3)
A 		43.9
(-0.4)
A 		38.3
(-0.9)
A 		80
(3)
P 		64
B 37.4
(-0.6)
P 		80.1
(3)
P 		9.7
(-3)
A 		29.9
(-1.3)
A 		70
C 55.3
(3)
P 		40.1
(-1.8)
A 		38.3
(-2.4)
A 		36.3
(-3)
A 		19
avr 36.2
(-1.3) 		54.7
(3) 		28.8
(-3) 		48.7
(1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 25.3
(-0.4)
A 		55.1
(3)
P 		44.8
(1.8)
A 		51.8
(2.6)
A 		2.3
(-3)
A 		32
(0.4)
A 		53
B 36.6
(0.8)
P 		48.9
(3)
P 		15.8
(-2.8)
A 		48.2
(2.9)
P 		27.9
(-0.7)
A 		14.8
(-3)
A 		34
C 22.8
(-1.3)
A 		26.2
(-0.7)
A 		45.9
(3)
A 		41.2
(2.1)
A 		13.8
(-3)
A 		30.6
(0.1)
P 		32
avr 28.2
(-0.5) 		43.4
(2.3) 		35.5
(0.9) 		47.1
(3) 		14.7
(-3) 		25.8
(-0.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.8
(-3)
A 		9.5
(0.8)
A 		10
(1.3)
A 		11.7
(3)
P 		6
B 11.9
(0.3)
P 		19.8
(3)
P 		2.2
(-3)
A 		6.4
(-1.6)
A 		18
C 18.3
(3)
P 		11.5
(-0.3)
A 		13.3
(0.5)
A 		6.1
(-3)
A 		12
avr 12
(1.3) 		13.6
(3) 		8.5
(-2.6) 		8.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.7
(-1.7)
A 		19.6
(3)
P 		9.7
(-0.1)
A 		13.1
(0.9)
A 		0.7
(-3)
A 		7.8
(-0.7)
A 		19
B 12.7
(1.3)
P 		16.3
(3)
P 		3.8
(-3)
A 		12.8
(1.3)
P 		11.3
(0.6)
A 		5.5
(-2.2)
A 		13
C 8.5
(0.3)
A 		8
(-0.1)
A 		11.7
(3)
A 		8.3
(0.2)
A 		4.5
(-3)
A 		10.2
(1.8)
P 		7
avr 8.6
(-1) 		14.6
(3) 		8.4
(-1.1) 		11.4
(0.9) 		5.5
(-3) 		7.8
(-1.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18286
Sequence Type Exemplar sequence
Representative Public ID R193.1 NCBI
Target Description R193.1 /REP_DB=WormBase Gene ID /WP=CE21131 /TR=Q9N5F4 /GB=AAF39954.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075819 NCBI Caenorhabditis elegans R193.1 (R193.1) mRNA, complete cds. 11/11 None
SNAP00000008767 ENSEMBL cdna:SNAP chromosome:CEL140:X:1154945:1155822:1 10/11 None
GENEFINDER00000008769 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1154945:1155822:1 11/11 None
R193.1 ENSEMBL cdna:known chromosome:CEL140:X:1154945:1155610:1 gene:R193.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1154944-1155610(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R193.1
Entrez Gene 187920 Entrez gene
SwissProt Q9N5F4 EMBL-EBI
WormBase CE21131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39954 Hypothetical protein R193.1 [Caenorhabditis elegans] ref|NP_508220.1| R193.1 [Caenorhabditis elegans] 1.0E-107
blast AAF39954 Hypothetical protein R193.1 [Caenorhabditis elegans] ref|NP_508220.1| R193.1 [Caenorhabditis elegans] 1.0E-102
blast AAF39954 Hypothetical protein R193.1 [Caenorhabditis elegans] ref|NP_508220.1| R193.1 [Caenorhabditis elegans] 7.0E-93
blast AAF39957 Hypothetical protein R193.3 [Caenorhabditis elegans] ref|NP_508219.1| R193.3 [Caenorhabditis elegans] 1.0E-19
blast AAF39957 Hypothetical protein R193.3 [Caenorhabditis elegans] ref|NP_508219.1| R193.3 [Caenorhabditis elegans] 5.0E-18
blast AAF39957 Hypothetical protein R193.3 [Caenorhabditis elegans] ref|NP_508219.1| R193.3 [Caenorhabditis elegans] 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:178499_AT
ctccaaaactgccatccatcggatctccaatgttcgtaattttttgcagtcatgtgagaa
tgacttgtggaaccagatcggtcatcaagaccggcgatgttgttagagactattttatct
gcgataaggtgtatcttggaaaattcggtgtagagacagtgtcggaaaaagtcgacggcg
gtggcgcattctctcttcaactgtatccgacgaacaacgaaatttcccgtgtagctgcag
agaagaaggttctatgcggacaacttctgaccggcttccgtcattgtacacagttcaatg
aacgcttctcatttggagattactacgtgattgtttctgatgaaatgctctcgatggaaa
cttatatggaggagtataacgtcaagaagcttagctccggtaacgtctggccatcgggtg
cgttatgctcaaaggtcttcatcatattcatcaactgggcgttacgcataacaacttggc
accatcgtctttgttttttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAAAACTGCCATCCATCGGATC 158 233 41 Antisense
ATCCATCGGATCTCCAATGTTCGTA 321 39 54 Antisense
AAAGTCGACGGCGGTGGCGCATTCT 612 119 208 Antisense
AAATTTCCCGTGTAGCTGCAGAGAA 71 117 260 Antisense
TATGCGGACAACTTCTGACCGGCTT 130 657 293 Antisense
GGCTTCCGTCATTGTACACAGTTCA 100 537 313 Antisense
AAGAAGCTTAGCTCCGGTAACGTCT 187 151 424 Antisense
GGGTGCGTTATGCTCAAAGGTCTTC 198 497 456 Antisense
ATTCATCAACTGGGCGTTACGCATA 273 11 486 Antisense
GTTACGCATAACAACTTGGCACCAT 426 445 501 Antisense
TGGCACCATCGTCTTTGTTTTTTGA 249 535 517 Antisense
Sequence Source Affymetrix Proprietary Database