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[178498_at]

Description C34C6.2 /REP_DB=WormBase Gene ID /WP=CE03050 /TR=Q18423 /GB=CAA91257.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 152.3
(0.9)
A 		121.6
(-1.8)
A 		108
(-3)
A 		176.3
(3)
A 		68
B 135.3
(1.1)
P 		156.2
(3)
A 		88.5
(-3)
A 		115.8
(-0.6)
A 		68
C 153.5
(3)
A 		153.5
(3)
A 		84.9
(-3)
A 		140.4
(1.9)
P 		69
avr 147
(3) 		143.8
(2.6) 		93.8
(-3) 		144.2
(2.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 38.2
(-2.6)
A 		115
(3)
A 		82.3
(0.6)
A 		68.5
(-0.4)
A 		32.7
(-3)
A 		87.2
(1)
A 		82
B 75.5
(3)
A 		71.1
(2.3)
A 		42.5
(-2.5)
A 		39.3
(-3)
A 		70
(2.1)
A 		75
(2.9)
A 		36
C 110.6
(3)
M 		109.6
(2.9)
A 		103.1
(2.2)
A 		56.1
(-3)
A 		93.1
(1.1)
A 		63.2
(-2.2)
A 		55
avr 74.8
(-0.2) 		98.6
(3) 		76
(-0.1) 		54.6
(-3) 		65.3
(-1.5) 		75.1
(-0.2) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 55.5
(3)
A 		26.4
(-2.9)
A 		28.2
(-2.5)
A 		25.8
(-3)
A 		30
B 43.2
(3)
P 		38.6
(1.8)
A 		20.5
(-3)
A 		24.7
(-1.9)
A 		23
C 50.8
(3)
A 		44.1
(1.5)
A 		29.6
(-1.7)
A 		23.7
(-3)
P 		27
avr 49.8
(3) 		36.4
(-0.2) 		26.1
(-2.7) 		24.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7
(-3)
A 		40.9
(3)
A 		17.9
(-1.1)
A 		17.4
(-1.2)
A 		9.9
(-2.5)
A 		21.2
(-0.5)
A 		34
B 26.3
(2.3)
A 		23.7
(1.4)
A 		10.3
(-3)
A 		10.4
(-3)
A 		28.5
(3)
A 		28
(2.8)
A 		18
C 41
(3)
M 		33.5
(1.5)
A 		26.2
(0)
A 		11.3
(-3)
A 		30.1
(0.8)
A 		21.2
(-1)
A 		30
avr 24.8
(0.6) 		32.7
(3) 		18.1
(-1.4) 		13
(-3) 		22.8
(-0) 		23.5
(0.2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3125
Sequence Type Exemplar sequence
Representative Public ID C34C6.2 NCBI
Target Description C34C6.2 /REP_DB=WormBase Gene ID /WP=CE03050 /TR=Q18423 /GB=CAA91257.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063443 NCBI Caenorhabditis elegans C34C6.2 (C34C6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000033114 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8679828:8683198:-1 11/11 None
C34C6.2 ENSEMBL cdna:known chromosome:CEL140:II:8679586:8683789:-1 gene:C34C6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033100 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8679582-8683786(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34C6.2
Entrez Gene 174389 Entrez gene
SwissProt Q18423 EMBL-EBI
WormBase CE03050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91257 Hypothetical protein C34C6.2 [Caenorhabditis elegans] ref|NP_495844.1| C34C6.2 [Caenorhabditis elegans] 0.0
blast CAE65948 Hypothetical protein CBG11126 [Caenorhabditis briggsae] 0.0
blast XP_395594 PREDICTED: similar to ENSANGP00000007211 [Apis mellifera] 1.0E-29
blast XP_395594 PREDICTED: similar to ENSANGP00000007211 [Apis mellifera] 5.0E-29
Sequence
Target Sequence 
>C. ELEGANS:178498_AT
gctggtgtgcacccgagtgaaatgaaaattggccgttcatctggtgttattgggtcagcc
caacacaacaatttctacgcggacactacctcaccctacagatcagctcaacgatttgtc
acaaatttcttgacagccaatcaagccaccatgccatacgtcggaggaaaacgacccaaa
actgatagaatgttgaatttggtcggagactggctgtttgcaattgtaaactcgccgaca
aacagtccaagagtgacaggaaacgatcattcaggacatcacaagaagaataatgatgga
gtttctgatgtgagcttcatctcccatcactttgtatttactctcctatcagctatcaca
actgaggtgataagtatttatatatgtgtgagtatgataagcttgactggtttgaacaaa
caccatcttcgtattggtatcatcgacgacgaaactgtttgcacgtctgagtgtccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGTGTGCACCCGAGTGAAATGA 245 295 1849 Antisense
GCCGTTCATCTGGTGTTATTGGGTC 458 283 1880 Antisense
CAGCCCAACACAACAATTTCTACGC 128 203 1904 Antisense
TCACCCTACAGATCAGCTCAACGAT 101 627 1939 Antisense
CCACCATGCCATACGTCGGAGGAAA 668 273 1994 Antisense
GGTCGGAGACTGGCTGTTTGCAATT 89 503 2049 Antisense
GTAAACTCGCCGACAAACAGTCCAA 434 459 2074 Antisense
TCTGATGTGAGCTTCATCTCCCATC 595 605 2152 Antisense
ATCTCCCATCACTTTGTATTTACTC 545 33 2167 Antisense
TTTACTCTCCTATCAGCTATCACAA 635 673 2185 Antisense
ACTGTTTGCACGTCTGAGTGTCCGT 706 97 2302 Antisense
Sequence Source Affymetrix Proprietary Database