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[178497_at]

Description C13G3.1 /REP_DB=WormBase Gene ID /WP=CE05277 /TR=Q17947 /GB=CAA98421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 48      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 405.3
(0.1)
P 		360.2
(-0.6)
P 		221.8
(-3)
P 		571.5
(3)
P 		350
B 399.4
(-0.9)
P 		271.9
(-2.3)
P 		212.8
(-3)
P 		749.6
(3)
P 		537
C 423.8
(-0.1)
P 		286.6
(-3)
P 		297.3
(-2.8)
P 		566.4
(3)
P 		280
avr 409.5
(-0.4) 		306.2
(-2) 		244
(-3) 		629.2
(3) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 433.4
(-2.7)
P 		528.6
(-0.4)
P 		421.6
(-3)
P 		465
(-1.9)
P 		492
(-1.3)
P 		665.2
(3)
P 		244
B 541.4
(2.9)
P 		400.3
(-2.2)
P 		390.9
(-2.6)
P 		379.1
(-3)
P 		416.6
(-1.6)
P 		543
(3)
P 		164
C 724
(3)
P 		417.6
(-3)
P 		517.9
(-1)
P 		442
(-2.5)
P 		526
(-0.9)
P 		578.5
(0.2)
P 		306
avr 566.3
(1.9) 		448.8
(-2.3) 		443.5
(-2.5) 		428.7
(-3) 		478.2
(-1.2) 		595.6
(3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 147.6
(3)
P 		78.2
(-1.6)
P 		58
(-3)
P 		83.7
(-1.3)
P 		90
B 127.4
(1.2)
P 		67.1
(-2)
P 		49.3
(-3)
P 		159.7
(3)
P 		110
C 140.3
(3)
P 		82.4
(-3)
P 		103.6
(-0.8)
P 		95.5
(-1.6)
P 		58
avr 138.4
(3) 		75.9
(-2.5) 		70.3
(-3) 		113
(0.8) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 79.9
(-3)
P 		188
(3)
P 		91.8
(-2.3)
P 		117.9
(-0.9)
P 		148.5
(0.8)
P 		162
(1.6)
P 		108
B 188.4
(2.2)
P 		133.2
(-0.9)
P 		94.9
(-3)
P 		100.4
(-2.7)
P 		169.3
(1.1)
P 		202.5
(3)
P 		108
C 268.4
(3)
P 		127.4
(-1.7)
P 		131.8
(-1.6)
P 		88.9
(-3)
P 		170.2
(-0.3)
P 		193.7
(0.5)
P 		180
avr 178.9
(2.5) 		149.5
(0.4) 		106.2
(-2.7) 		102.4
(-3) 		162.7
(1.3) 		186.1
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13730
Sequence Type Exemplar sequence
Representative Public ID C13G3.1 NCBI
Target Description C13G3.1 /REP_DB=WormBase Gene ID /WP=CE05277 /TR=Q17947 /GB=CAA98421.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073404 NCBI Caenorhabditis elegans C13G3.1 (C13G3.1) mRNA, complete cds. 11/11 None
SNAP00000001341 ENSEMBL cdna:SNAP chromosome:CEL140:V:11014493:11014953:-1 11/11 None
GENEFINDER00000001345 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11014493:11014953:-1 11/11 None
C13G3.1 ENSEMBL cdna:known chromosome:CEL140:V:11014493:11014953:-1 gene:C13G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11014492-11014953(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13G3.1
Entrez Gene 182580 Entrez gene
SwissProt Q17947 EMBL-EBI
WormBase CE05277 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98421 Hypothetical protein C13G3.1 [Caenorhabditis elegans] ref|NP_505805.1| C13G3.1 [Caenorhabditis elegans] 2.0E-69
blast CAE75143 Hypothetical protein CBG23073 [Caenorhabditis briggsae] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:178497_AT
aagttccaattgatcacttcccagcttcatctcaacaagtctctaagactcgtgagcata
agccacttcgactttcaacagtttcacttcattcaaaagaagttaatgctgcagttgctc
cattaagcccatcagtacgccgatcccaatttaatttctcctccgaagtaacaaagtctg
cccttccaaaggttcgagcatcaattccaccactcaagagagctctgacaagtccagctc
taccagttcaacacctgaatctcaaccttgtacgcaaaggatcaaacccatcatctcaaa
cgagtcgcaacaattctgtcactgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTCCAATTGATCACTTCCCAGC 239 157 23 Antisense
CCAGCTTCATCTCAACAAGTCTCTA 337 273 43 Antisense
AGCATAAGCCACTTCGACTTTCAAC 160 75 77 Antisense
TGCAGTTGCTCCATTAAGCCCATCA 187 577 132 Antisense
GCCGATCCCAATTTAATTTCTCCTC 219 285 161 Antisense
AAGGTTCGAGCATCAATTCCACCAC 85 161 211 Antisense
GAGCTCTGACAAGTCCAGCTCTACC 683 387 242 Antisense
AGCTCTACCAGTTCAACACCTGAAT 691 79 258 Antisense
ACACCTGAATCTCAACCTTGTACGC 534 109 273 Antisense
TCAAACCCATCATCTCAAACGAGTC 247 629 304 Antisense
GAGTCGCAACAATTCTGTCACTGAC 556 399 324 Antisense
Sequence Source Affymetrix Proprietary Database